Streptomyces durmitorensis: M4V62_18385
Help
Entry
M4V62_18385 CDS
T08503
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdur
Streptomyces durmitorensis
Pathway
sdur03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdur00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M4V62_18385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdur03021
]
M4V62_18385
03400 DNA repair and recombination proteins [BR:
sdur03400
]
M4V62_18385
Enzymes [BR:
sdur01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M4V62_18385
Transcription machinery [BR:
sdur03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M4V62_18385
DNA repair and recombination proteins [BR:
sdur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M4V62_18385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
UQT56911
LinkDB
All DBs
Position
complement(4123285..4127184)
Genome browser
AA seq
1299 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQVENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRSFGSSAEATMAFDAKELSLQAKVDIRFPVGTIPPRGWTPPAVEEGEPEYQQGDSFRLR
TTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGFFWAT
RSGVTVAISDVVVPEAKKAIVAGYEAQDEKVQKQYERGLITKDERTQELIAIWTKATNEV
AEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFREGLS
VLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLKIAVKG
EDGVLRKTENVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVANGVEEVKTRSVL
TCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDIT
QGLPRVVELFEARTPKGVAPISEAAGRIRIEETEKTKKIVVTPDDGSDETPFPISKRAKV
LVREGDHVEVGQKLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIEII
IRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKASLAT
ESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVEPTEE
AKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgacagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggtaagtacaagcgtgtccgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacattgagctggccgcgcct
gtcacgcacatctggtacttcaagggcgttccgtcgcgcctcggctacctgcttgatctc
gccccgaaggacctcgaaaaggtcatctacttcgcggcgtacatgatcacgttcgtggac
gaggagcgccgtacgcgtgacctgccctccctggaggcgcacgtctccgtggagcgtcag
caggtcgagaaccgtcgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagcttgaggccgagggcgccaaggccgacgtacgccgcaaggtgcgcgaaggt
gccgagcgtgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtctggaaccgcttcaagaacctcaaggtccaggacctggagggtgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggttcgatgggtgccgctgca
ctgcagaagcgccttgagtcgttcgacctggatgaggaagccgagcggcttcgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctcgactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtggacgcc
ctcttcgacaacggtcgtcgtggtcgcccggtcaccggtcccggtaaccgcccgctgaag
tccctgagcgacatgctcaagggcaagcagggtcgattccgtcagaaccttctcggtaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggcccgcagctgaagctgcaccag
tgtggtctgccgaaggccatggctctggagctcttcaagccgttcgtgatgaagcgcctg
gttgacctcaaccacgcgcagaacatcaagtcggcgaagcgcatggtcgagcgcggccgc
acggtcgtgtacgacgtcctggaagaggtcatcgccgagcacccggttctcctgaaccgt
gcgccgacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccattcagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggcagacggccgtcccgtcaccatgccgacccaggac
atggtccttggcctcttcttcctcacgacggacgaggaagagcgcaaggtcatcggtgag
ggccgttcgttcggttcctccgccgaggcgaccatggcgttcgacgccaaggagctctcg
ctccaggcgaaggtcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggccgtcgaagagggcgagccggagtaccagcagggcgacagcttccggctgcgt
acgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactacccgttcgtcgac
tactcggtgggcaagaagcagctctccgagatcgtcaacgacctggccgagcgctacccc
aaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttcttctgggcgacc
cgttccggtgtcaccgtggccatctccgacgtcgtggtccccgaggccaagaaggcgatc
gtcgcgggctacgaggcgcaggacgagaaggtccagaagcagtacgagcgcggtctgatc
accaaggacgagcgcacgcaggagctcatcgcgatctggaccaaggcgaccaacgaggtt
gccgaggcgatgaacgcgaacttccccaagacgaaccccatcttcatgatggttgactcg
ggtgcccgaggaaacatgatgcagatgcgtcagatcgccggtatgcgtggtctggtgtcg
aacgcgaagaacgagacgatcccgcgcccgattaaggcatcgttccgtgagggcctctcg
gtcctcgagtacttcatctccacgcacggtgcccgtaagggtcttgcggacacggctctc
cgtaccgccgactccggttacctcacccgtcgtctggtcgacgtctctcaggacgtcatc
attcgcgaggaggactgtggcaccgagcgcggtctgaagctcaagatcgcggtcaagggc
gaggacggtgtgctccgcaagacggagaacgtcgagacctcggtgtacgcccgcatgctg
gccgaggacgtcgtcatcgacggcaaggtcatcgcgccggccaacgtcgacctcggtgac
gtcctcatcgacgccctggtcgccaacggcgtggaggaggtcaagacccgttcggtcctg
acctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcgctcgccaccggc
aagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtccatcggtgagccc
ggcacgcagctgacgatgcgtacgttccacaccggtggtgtggccggtgacgacatcacc
cagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgcccaagggtgtcgccccg
atctcggaggcggcaggccgcatccgtatcgaggagaccgagaagaccaagaagatcgtc
gtcacgccggacgacggcagcgacgagactcccttcccgatctcgaagcgtgccaaggtc
ctcgtgcgtgagggtgaccacgtcgaggtgggccagaagctcaccttcggtgccaccaac
ccgcacgacgtgctgcggatcctcggtcagcgcgcggtccaggtccacctggtcggcgaa
gtccagaaggtctacaacagccagggcgtgtcgatccacgacaagcacatcgagatcatc
atccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcggagctgctgccg
ggcgagctcgtcgagcgctcgaagttcgagaccgagaaccgtcgtgtggtcacggaaggc
ggccacccggcctccggccgtccgcagctgatgggtatcaccaaggcctcgctggcaacg
gagtcctggctgtcggccgcctccttccaggagacgaccagggtcctgacggacgcggcg
atcaacgccaagtccgactccctgatcggcctcaaggagaacgtcatcatcggtaagctc
atcccggccggtacgggcctgtcccgctaccgcaacatccgggtggagccgaccgaggaa
gccaaggctgcgatgtactcggccgtcggttacgacgacatcgactactcgcccttcggc
acgggctccggccaggctgttccgctggaggactacgactacgggccttacaaccagtag
DBGET
integrated database retrieval system
