Streptomyces durmitorensis: M4V62_24440
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Entry
M4V62_24440 CDS
T08503
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sdur
Streptomyces durmitorensis
Pathway
sdur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4V62_24440 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdur03021
]
M4V62_24440 (rho)
03019 Messenger RNA biogenesis [BR:
sdur03019
]
M4V62_24440 (rho)
Transcription machinery [BR:
sdur03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
M4V62_24440 (rho)
Messenger RNA biogenesis [BR:
sdur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
M4V62_24440 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
ATPase_2
NACHT
AAA_28
Spore_III_AA
AAA_22
AAA_14
AAA_19
AAA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UQT57983
UniProt:
A0ABY4PVS0
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All DBs
Position
5435948..5437132
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AA seq
394 aa
AA seq
DB search
MSTATITRNKTTTATETPVVAASGILDVSHNANGHLRTGDCLPTPNDVQVPSTLIRQLGL
RAGDMVQGACGKARTLTSVERVNGHSAEALRRRARFGDLTPLHPRERLRLETPGEGGASV
ATRLIDLVAPVGKGQRGLIVAPPRTGKTVLLQQIAAAVSANHPEAHLMVVLLDERPEEVT
DMKRSVRGEVLASTFDRPAKQHIALAELAVERAKRLTEEGKDVVMLFDSLTRLCRAYNNA
ASSGGRTLSGGVDAAAIQGPKRLFGAARCAEEGGSLTMLATVLVETGSRADDYYFEELKG
TGNMELRLDRGMAERRVFPAVDVTPSGTRRDELLVPADELTAVRGLRRALHGRDPQSNLE
AIIERLRKTPGNAAFLRQVQQTVPGAGSSKVNGG
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgcaaccatcacccggaacaagaccaccacagccaccgagacccccgtcgtc
gccgcatccggcatcctcgacgtgagtcacaacgccaacggccatctccgcaccggagac
tgcctccccaccccgaacgacgtacaggtcccctccacgctcatccgccaactcggcctg
cgtgcgggcgacatggtccagggcgcctgcggcaaggcccgcaccctcacctccgtcgag
cgggtcaacggacactccgccgaagccctgcgcaggcgcgcgcggttcggtgacctcacg
ccgctgcacccccgcgagcggctgcgtctggagacgccgggtgaaggcggcgccagtgtc
gcgacccggctcatcgacctcgtagcccccgtcggcaagggccagcgcggcctgatcgtc
gcgccgccccgcaccggcaagaccgttctgctccagcagatcgccgccgccgtcagcgcg
aaccaccccgaggcgcacctcatggtggtcctgctcgacgaacggcccgaagaggtcacg
gacatgaagcgttccgtacggggtgaagtgctcgcctcgaccttcgaccggcccgccaag
cagcacatcgccctggccgaactggccgtcgagcgcgccaagcggctcaccgaggagggc
aaggacgtcgtcatgctcttcgactccctcacccggctctgccgcgcgtacaacaacgcg
gcgtccagtggcggccgcaccctctccggaggcgtcgacgccgccgccatccagggcccc
aagcgcctcttcggcgccgcgcggtgcgcggaggagggcgggtccctgaccatgctcgcc
accgtgctcgtggagaccggatcgcgcgccgacgactactacttcgaggagctcaagggc
accggcaacatggagctccgcctcgaccgcggcatggccgagcgccgtgtcttccccgcc
gtcgacgtcaccccgtccggcacgcgccgtgacgaactgctcgtccccgccgacgagttg
accgccgtacgcgggctgcggcgcgccctgcacggcagggacccgcagagcaacctggag
gcgatcatcgaacgcctgcgcaagaccccgggcaacgccgccttcctgcgccaggtgcag
cagaccgtgcccggcgcgggctcctccaaggtcaacggcggttga
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