Streptomyces durmitorensis: M4V62_24990
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Entry
M4V62_24990 CDS
T08503
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdur
Streptomyces durmitorensis
Pathway
sdur03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdur00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M4V62_24990 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdur03400
]
M4V62_24990 (mfd)
Enzymes [BR:
sdur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M4V62_24990 (mfd)
DNA repair and recombination proteins [BR:
sdur03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M4V62_24990 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UQT58082
LinkDB
All DBs
Position
5565902..5569432
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDSALAEAVKAATDGNRTHVDLVGPPAARPFAVAALARETNRTVLAVTA
TGREAEDLAAALRTILPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVIVAPVRSVLQPQVKGLGDLEPVALRTGESTDLNETVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAAHGLWAPPCRELL
LTDDVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPEHSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDHASDLGMM
WWSVSPFAADEDLDEDTLKLGMHATETYRGDTAKALADTKGWLADGWRTVYVTEGHGPAA
RTVEVLGGEGIAARLDADLSELTPSVVHVSCGSIDFGFLDPALKLAVLTETDLSGQKAAG
KDGQRMPARRRKTIDPLTLEVGDYIVHEGHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFAPDTPWQRELEDAFPYVETPDQLTTIAEVKDDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVRALSRFQTETESKA
TLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYSYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKVELPVDAHVPHDYAPGERLRLAAYRSIASASSEQDVKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACEVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIKENAH
QILVPRPKTAKVGGKPLIGRELLGWVGEFLTTILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgctgtcgtcaaggactccgcactcgccgaagcggtc
aaggccgcgaccgacggcaaccgcacccacgtagacctggtcggcccgcccgccgcccgc
cccttcgcggtcgccgctcttgcccgcgagacgaaccgcaccgtcctcgccgtgacggcg
accggccgcgaggccgaggacctggcggcggccctgcgcacgatcctgccgccggacgga
gtcgtcgagtacccctcctgggagacgctcccgcacgagcgcctctcgccccgctccgac
accgtcggccgccgcctcgccgtcctgcgccgcctggcgcacccgcgtcccgacgacccc
gagacgggccccgtctccgtcatcgtcgcccccgtgcgctcggtcctccagccgcaggtc
aagggcctgggagacctggagcccgtggccctgcgcaccggtgagtccacggacctgaac
gagaccgtggaggccctcgcggcagccgcgtactcccgtgtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgccgaccgaggagcacccc
ctccgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgcgcacggcctgtgggcgccgccctgccgcgagctgctc
ctcacggacgacgtgcgcgaaagggccgccgcactggccgaggcccaccccgagctcggt
gagctgctcggcaagatcgccgagggcatcgccgtcgagggcatggagtccctcgcccct
gtcctggtcgacgacatggagctgctgctcgacgtcctgccggagcacagcatggccgtg
gtctgcgaccccgagcgcgtgcgcacccgcgcggccgacctggtggcgacctcgcaggag
ttcctccaggccagctgggccgcgacggccggtggcggagaggcccccatcgacgtgggc
gcggcctccctctggggcatcgcggacgtccgcgaccacgcgagcgacctcggcatgatg
tggtggtcggtctccccgttcgccgccgacgaggacctggacgaggacaccctcaagctc
ggcatgcacgccaccgagacctaccgcggcgacaccgcgaaggcgctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgtacgtgacggagggccacgggcccgcggcc
cgcaccgtcgaggtcctgggcggcgagggcatcgcggcccgcctcgacgccgacctcagc
gagctcacgccgtccgtcgtgcacgtctcctgcggctcgatcgacttcggtttcctggac
ccggccctcaagctcgcggtcctcaccgagaccgacctctcggggcagaaggcggccggc
aaggacggccagcggatgcccgcgcgccgcaggaagacgatcgacccgctgaccctggag
gtcggcgactacatcgtccacgaggggcacggcgtcggccgctacatcgaaatggtgcag
cgcacggtccagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaagcgc
ggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccgcctgggcggcgccgactggacgaagacgaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctctacagcgcc
cgcatggcggcccccggccacgccttcgcccccgacaccccctggcagcgcgagctggag
gacgccttcccgtacgtggagacgcccgaccagctgaccaccatcgccgaggtgaaggac
gacatggagaagacggtcccgatggaccgcctgatctgtggcgacgtcggctacggcaag
acggagatcgccgtccgcgccgccttcaaggcggtccaggacggcaagcaggtcgccgtc
ctcgtcccgaccacgctcctggtgcagcagcacttcggtacgttctccgagcgctactcc
caattccccgtcaaggtaagggcgttgagccgcttccagacggagacggagtccaaggcg
accctggagggcctgcgcgacggctcggtcgacatcgtgatcggcacgcaccgcctcttc
tcctccgagacgaagttcaaggatctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtcgacgtcctgaccatg
tcggccacccccattccccgtacgctcgaaatggccgtgaccggcatccgcgagatgtcg
acgatcaccacgccccccgaggagcgccaccccgtcctgaccttcgtcgggccctacgag
gagaagcagatcggcgcggccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtccatcgaccgggcggcggcccgcctcagggacatcgtgccc
gaggcgcgcatcgccaccgcgcacggccagatgtccgaacaggccctggagcaagtggtg
gtggacttctgggagaagaagttcgacgtgctcgtctccacgacgatcgtcgagtcgggc
atcgacatctcgaacgccaacacgctgatcgtcgagcgcggcgacaacttcggcctctcg
cagctccaccagctgcgaggccgcgtgggccgaggccgcgagcgcggttattcgtacttc
ctctacccgccggagaagcccctcacggagacggcccacgagcgcctggcgaccatcgcc
cagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gcgggcaacctcctgggcggcgaacagtcgggacacatcgcgggcgtcggcttcgacctc
tacgtacgcatggtgggcgaggccgtggccgactaccgcgcgtccctggagggcggcgtg
gaggaggagccgccgctggaggtcaaggtcgagctgccggtcgacgcgcacgtcccgcac
gactacgcccccggcgagcgccttcgcctcgcggcctaccgctcgatcgcctccgcgagc
agcgagcaggacgtcaaggcggtgcgcgaggaactcaccgaccgctacggcaagttgccc
gagcccgtggagaatctcctcctggtggcgggcctgcgcatgctggcgcgcgcgtgcgag
gtcggcgagatcgtgctgcagggcaacaacatccggttcgcgccggtggagctgcgggag
tcgcaggagctcaggctcaagcggctctaccccggcacggtcatcaaggagaacgcccac
cagatcctcgtcccgcgcccgaagacggcgaaggtcggcggaaagccgttgatcgggcgt
gaactcctgggctgggtcggggagttcctgacgacgatcctggggtcgtag
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