Streptomyces davaonensis: BN159_2703
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Entry
BN159_2703 CDS
T02518
Name
(GenBank) putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sdv
Streptomyces davaonensis
Pathway
sdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN159_2703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdv03019
]
BN159_2703
Messenger RNA biogenesis [BR:
sdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN159_2703
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CCK27082
UniProt:
K4R1S0
LinkDB
All DBs
Position
complement(3073799..3075526)
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AA seq
575 aa
AA seq
DB search
MPYRYVARVVEESLLSHPHPELGSPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIV
DCGVLFPEEEQPGIDLILPDFSSIRDRLDDIEGIVLTHGHEDHIGGVPFLLREKPDIPLI
GSKLTLALIEAKLQEHRIRPYTLEVAEGNRERIGPFDCEFIAVNHSIPDALAVAIRTPAG
MAVHTGDFKMDQLPLDSRLTDLHAFARLSEEGIDLLLADSTNAEVPGFVPPERDISNVLR
QVFAGARKRIIVASFASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARDLGYLKVPP
GLVVDVKTLDDLPDNEVVLVCTGSQGEPMAALSRMANRDHQIRIVDGDTVILASSLIPGN
ENAVYRVINGLTRWGANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLR
ANAELGALTGVPHDRIVIAEDGVAVDLIEGKAKISGKVQAGYVYVDGLSVGDVGEPALKD
RKILGDEGIISVFVVVDSSTGKITGGPHIQARGSGIEDSAFGDVIPKIAEVLERSAQDGV
VEPHQLQQLIRRTLGKWVSDTYRRRPMILPVVVEV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
gtgccctaccggtacgtggcgcgcgtggttgaggagagtcttttgagtcatccgcatcct
gaactcggctcgcccccgccgctccccgaaggcggcctgcgggtcaccccgctcggcggc
ctcggcgaaatcggccggaacatgaccgtcttcgagtacggcggccgcctgctgatcgtc
gactgcggagtgctcttccccgaggaggagcagcccggaatcgacctgatcctgcccgac
ttctcgtccatccgggaccgcctcgacgacatcgagggcatcgtcctcacccatggccac
gaggaccacatcggcggggtccccttcctgctccgcgagaagccggacatcccgctgatc
ggctccaagctgaccctcgccctgatcgaggccaagctccaggagcaccgcatccgcccg
tacacccttgaggtggcggaaggcaaccgcgagcgcatcggccccttcgactgcgagttc
atcgcggtcaaccactccatcccggacgccctggccgtcgccatccgcacccccgcgggc
atggcggtccacaccggcgacttcaagatggaccagctcccgctggacagccgcctcacc
gacctgcacgccttcgcccgcctgagcgaggagggcatcgacctcctcctcgccgactcg
acgaacgcggaggtcccgggcttcgtcccgcccgagcgggacatctccaacgtcctgcgg
caggtcttcgccggcgcccgcaagcggatcatcgtggcgagcttcgccagccacgtccac
cgcatccagcagatcctggacgcggcccatgagtacggccgccgcgtcgccttcgtgggc
cgctccatggtccgcaacatgggcatcgcgagggacctgggctatctgaaggtcccgccg
ggcctggtggtcgacgtcaagaccctcgacgacctccccgacaacgaggtcgtgctggtc
tgcacgggctcccagggcgagcccatggcggccctgtcccgcatggccaaccgggaccac
cagatccgcatcgtcgacggcgacacggtgatcctggcgtcctcgctcatccccggcaac
gagaacgccgtctaccgcgtgatcaacggcctgacccgctggggcgcgaacgtcgttcac
aagggcaacgccaaggtgcacgtctccggccacgcgtccgcgggcgagctcctgtacttc
tacaacatctgccgcccgaagaacctgatgccggtgcacggcgaatggcgccacctgcgc
gccaacgccgagctgggcgccctcacgggtgtcccgcacgaccgcatcgtcatcgccgag
gacggcgtggccgtcgacctcatcgagggcaaggccaagatctccggcaaggtccaggcg
ggttacgtctacgtcgacggcctctccgtcggcgatgtcggcgagccggcgctgaaggac
cggaagatccttggtgacgagggcatcatctcggtcttcgtcgtcgtggactcgtccacc
ggcaagatcacgggtggcccgcacatccaggcccgcggctccggcatcgaggactccgcc
ttcggggacgtcatcccgaagatcgcggaggtgctggagcggtcggcccaggacggcgtg
gtggagccccatcagctccagcagctcatccgccgcacgctcggcaagtgggtctccgac
acctatcgccgcaggccgatgatcctgccggtggtggtggaggtctga
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