Streptomyces davaonensis: BN159_3055
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Entry
BN159_3055 CDS
T02518
Symbol
rho1
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sdv
Streptomyces davaonensis
Pathway
sdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN159_3055 (rho1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdv03021
]
BN159_3055 (rho1)
03019 Messenger RNA biogenesis [BR:
sdv03019
]
BN159_3055 (rho1)
Transcription machinery [BR:
sdv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BN159_3055 (rho1)
Messenger RNA biogenesis [BR:
sdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BN159_3055 (rho1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
CCK27434
UniProt:
K4R416
LinkDB
All DBs
Position
complement(3472890..3474917)
Genome browser
AA seq
675 aa
AA seq
DB search
MSDTTDLMGARVEETAAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGAPAAPKADAATETKPKRRATSKARTGEDAPAKKTAKAEAPA
EKAVAQQQIEIPGQPAGGTARAGENNDEAPAERRRRRATAEAGAPAAAAPETIVAEAKSE
PKAETPAQAQGDAKGDAGDGEGRRRDRRERGRDRDRGDRGDRGDRGDRRKGDDQQGGQRG
QQQGQQQGGGRQDRNAGPQDDDDFEGGRRGRRGRYRDRRGRRGRDEMGQEPQIAEDDVLI
PVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVTGAVRQPKEGERREK
FNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQDRLRLETDPGVLTTRIIDLVSPIGKGQ
RGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTF
DRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDST
ALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGTGNMELKLDRKLADK
RIFPAVDVDASGTRKEEILLGNEELAVVWKLRRVLHALDQQQAIELLLDKMKQTKSNVEF
LMQIQKTTPTPGNGD
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgctgccgcgcccgcc
acggacgcctccgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctc
gagggcatggtgctggccgagcttcagcaggtcgcatccggcctcggcatcaggggcacg
gcgcgcatgcgcaagagccagctgatcgaggtcatcaaggaagcgcaggctgggggtgcc
cccgcggcccccaaggcggacgccgcgaccgagaccaagccgaagcgccgggccacctcc
aaggcccgcaccggcgaggacgcgcccgccaagaagacggcgaaggccgaggcgcccgcc
gagaaggccgtggcgcagcagcagatcgagatccccggccagccggccggcggcaccgcc
cgtgcgggcgagaacaacgacgaggctcccgcggagcgccgtcgccgtcgtgcgaccgcc
gaggccggtgcccccgcggccgccgcgccggagaccatcgtcgccgaggccaagagcgag
cccaaggccgagacgcccgcgcaggcgcagggcgacgccaagggtgacgccggtgacggc
gagggccgccgccgggaccgccgtgagcgcggccgcgaccgtgaccgcggcgaccgtggt
gaccgcggcgaccgcggtgaccgtcgtaagggcgacgaccagcagggcggccagcgcggt
cagcagcagggccagcagcagggcggcggtcgtcaggaccgtaacgccggtccgcaggac
gacgacgacttcgagggcggccgtcggggccgtcgcgggcgctaccgcgaccgccgtggc
cgtcgtggccgcgacgagatgggccaggagccgcagatcgccgaggacgacgtcctgatc
cccgtcgcgggcatcctggacatcctcgacaactacgccttcatccgtacgtcgggctac
ctgcccggccccaacgacgtgtacgtctccctcgcccaggtccgcaagaacggcctgcgc
aagggtgaccacgtcaccggtgccgtgcggcagcccaaggagggcgagcgccgcgagaag
ttcaacgcgctggtccgcctggactccgtcaacggcatggcgcccgaacacggccgtggc
cgcccggagttcaacaagctgaccccgctgtacccgcaggaccgcctccgcctggagacg
gacccgggtgtgctgacgacccgcatcatcgacctggtgtcgccgatcggtaaggggcag
cgcggtctgatcgtggctccgccgaagaccggcaagaccatgatcatgcaggccatcgcc
aacgcgatcacgcacaacaaccccgagtgccacctgatggtcgtcctggtcgacgagcgt
ccggaagaggtcaccgacatgcagcggtcggtcaagggcgaggtcatctcctcgaccttc
gaccgcccggccgaggaccacacgacggtcgcggagctcgcgatcgagcgtgcgaagcgg
ctggtggagctgggtcacgacgtcgtcgtgctgctcgactccatcacgcgtctgggccgt
gcctacaacctggcggcgcccgcctccggccgcatcctgtccggtggtgtcgactcgacc
gcgctgtacccgccgaagcggttcttcggtgcggcgcggaacatcgaggacggtggctcg
ctcaccatcctggccacggctcttgtcgacaccgggtcccgcatggacgaggtgatcttc
gaggagttcaagggcaccggcaacatggagctcaagctcgaccggaagctcgccgacaag
cgcatcttcccggcggtggacgtcgacgcgtccggtacccgtaaggaagagatcctgctc
ggcaacgaggagctggcggttgtctggaagctgcgtcgggtgctgcacgcgctcgaccag
cagcaggcgatcgagctgctgctcgacaagatgaagcagacgaagtcgaacgtcgagttc
ctgatgcagatccagaagacgacgccgacgcctggcaacggcgactga
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