Streptomyces davaonensis: BN159_3067
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Entry
BN159_3067 CDS
T02518
Name
(GenBank) DNA polymerase LigD, polymerase domain-containing protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdv
Streptomyces davaonensis
Pathway
sdv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BN159_3067
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdv03400
]
BN159_3067
Enzymes [BR:
sdv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BN159_3067
DNA repair and recombination proteins [BR:
sdv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BN159_3067
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
CCK27446
UniProt:
K4QU47
LinkDB
All DBs
Position
3489666..3490553
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AA seq
295 aa
AA seq
DB search
MTPITEVEGRRLALSNLEKVLYPATGFTKGEVLHYYATAADVLLPHLRDRPVSFLRYPDG
PDGQVFFTKNVPPGTPDWVTTAEVPRSEGPARMVLVQDLPSLMWAANLVAEFHTHQWVAQ
APGAADRLVFDLDPGSPATVVECCEVALWLRERLAADGIEAYAKTSGSKGLHLLAAVRGS
PSDEVSEYAKGLAVEAEKAMPRLVLHRMTRSLRPGKVFVDWSQNAARKTTATPYTLRARP
EPWVSAPVTWAEVEECRSPTQLAFTAPDVAPRIQDYGDLLAPLFAQDRAGTLPRS
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgacgccgatcacagaggtggaggggcgacggctcgcgctcagcaacctggagaaggtg
ctgtacccggcgaccggcttcaccaagggcgaggtgctgcactactacgccaccgccgcc
gacgtactgctgccccatctgcgtgaccggccggtctccttcctgcgctacccggacggg
ccggacggacaggtcttcttcaccaagaacgtgccgcccggtacacccgactgggtcacc
accgccgaggtcccccgttcggaggggcccgcccggatggtgctcgtccaggacctcccg
agcctgatgtgggcggcgaacctggtcgccgagttccacacccaccagtgggtcgcccag
gcgcccggcgccgccgaccggctcgtcttcgacctcgacccgggttccccggcgaccgtc
gtggagtgctgcgaggtcgccctgtggctgcgcgagcggctcgccgcggacgggatcgag
gcgtacgccaagacgtccgggtccaaggggctgcatctgctcgcagcggtccggggttcc
ccctccgacgaggtgtccgagtacgccaaggggctcgccgtggaggccgagaaggccatg
ccgcggctggtgctgcaccggatgacgcgcagcctgcggccggggaaggtcttcgtcgac
tggagccagaacgccgcccggaagacgacggccacgccctacaccctccgcgcccgcccc
gagccctgggtctccgcgcccgtcacctgggccgaggtcgaggagtgccgctcccccacc
cagctggccttcaccgcaccggacgtggccccgcgcatccaggactacggcgatctgctg
gcgccgctcttcgcccaggaccgggcggggacgctgccgcgaagctga
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