Streptomyces davaonensis: BN159_5858
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Entry
BN159_5858 CDS
T02518
Symbol
hrdA
Name
(GenBank) RNA polymerase principal sigma factor hrdA
KO
K03086
RNA polymerase primary sigma factor
Organism
sdv
Streptomyces davaonensis
Pathway
sdv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BN159_5858 (hrdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdv03021
]
BN159_5858 (hrdA)
Transcription machinery [BR:
sdv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BN159_5858 (hrdA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_28
KORA
Motif
Other DBs
NCBI-ProteinID:
CCK30237
UniProt:
K4RAJ1
LinkDB
All DBs
Position
6541131..6542444
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AA seq
437 aa
AA seq
DB search
MCRTPHWVPVPESSERGRPVPHGSHTPAIPLIAYGTDSGEAADSALEAALPHTSAAIILE
VAPVQTQTLTQTEISTDGTEPDAESDVLVAVPPQNRAVHHPETEPETQPEAQPDTPAVLE
EPPEPVRVPRADTGGPSSDLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLSNTP
DLDSQLGLDLDRLVVMGRMAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGNLGLIRA
VEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRMLQERG
YEPTPEEVAAHLDLPPERVSEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESA
AFLLLREHLEAVLSTLGERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTL
NKLRDHAFADQLRGYLD
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgtactccacactgggttccggtgcctgagtcctcggagcgcggccgacccgtc
ccccacgggtcccacacccccgcgattccgctcatcgcgtacgggacggacagcggcgag
gccgccgactccgccctcgaagccgcgctgccgcacacttcagcagcgatcatcctggag
gtcgcccccgtgcagacccagaccctcacccagaccgagatcagtacggacggcacggaa
ccggacgccgagtccgacgttctcgtcgcggtgcccccacagaaccgtgccgtgcaccac
cccgagacggagccggagacccagccggaggcccagcccgacactccggccgtcctcgaa
gaaccgcccgagccggtgcgcgtcccgcgtgccgacaccggcgggccgtcctcggacctg
ttccgccagtacctgcgggagatcggccggatccccctgctcaccgccgcggaggaggtc
gagctcgcccgccgggtcgaggccggtcttttcgccgaggagaagctgagcaacaccccc
gacctggacagccagttggggctggacctggaccgactggtggtcatggggcggatggcc
aagcgccgtctgatcgaggcgaacctcaggctggtcgtctccgtggccaagcggtacgtg
ggccgcggtctgaccatgctggacctggtccaggagggaaacctcggcctgatccgcgcc
gtcgagaagttcgactacgcccgcggctacaagttctccacgtacgccacctggtggatc
cgccaggccatgtcccgggccctggccgaccaggcccgcacgatccgcgtcccggtccat
gtcgtggagctgatcaaccgcgtggtccgcgtccagcgccgcatgctccaggaacgcggc
tacgagccgaccccggaggaggtggccgcccacctcgatctccccccggagcgcgtcagc
gaggtactgcgcctggcccaggaaccggtctccctgcacgccccggtgggcgaggaggac
gacgtggccctcggcgacctcatcgaggacggcgacgcggcgagccccgtggaatcggcg
gcgttcctgttgctgagggagcacctggaagcggtcctctccaccctcggcgaacgcgaa
cgcaaggtggtccaactccgctacggcctggccgacggccgcccccgcacgctggaggag
ataggccgcatcttcggcgtgaccagggaacgcatccgccagatcgagtccaagaccctg
aacaaactcagggaccacgccttcgcggaccagctgaggggatacctggactag
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