Streptomyces decoyicus: K7C20_09355
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Entry
K7C20_09355 CDS
T07553
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sdw
Streptomyces decoyicus
Brite
KEGG Orthology (KO) [BR:
sdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdw03019
]
K7C20_09355 (hrpB)
Enzymes [BR:
sdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K7C20_09355 (hrpB)
Messenger RNA biogenesis [BR:
sdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K7C20_09355 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QZY15436
LinkDB
All DBs
Position
2124298..2126961
Genome browser
AA seq
887 aa
AA seq
DB search
MIRRDALDQLPVRTALPALRAALDGPGTAVLCAPPGTGKTTLVPLDLAGLCGEGPVRRVL
VAEPRRIAARAAARRMAWLLGERVGEQVGFTVRGERRAGPRTTVEVVTTGVLLQRLQRDP
ELAGVDVVVLDECHERHLDADTSAAFLLDVRETLRPELRLVAASATTDAEGWARLLGGPE
GAAPVVEAAGVSHPVGVVWAPPERPVRPAHGMRVDPALLAHVAAVVRRALREQTGDVLCF
LPGVGEIGRVAGELAGVDAEVLQVHGRAPAEVQDAVLAGGSGVRRVVLATSVAESSLTVP
GVRVVVDSGLARVPRTDHARGLSALTTVRASRAAGRQRAGRAGREAPGVVYRCWSEGEDG
RLPAFPDPEIKVADLTAFALQSACWGDPTAGGLALLDAPPAGALAAAREVLTAIGAVDGA
GRATGRGGRMARIGLHPRLARALLDGAPEVGVRRAAEVVALLSEEPPRAYGDDLAAAWRT
ARRGGDAYAARWRQEARRLASAAGEPSAGSGAGGRGGSAADAGADAGGGRTGGGGGAAAA
SEDAVAGLIAALAFPERVARARGAGSFLMASGTGADVAGAGTGAQAGWGHRAGSAGDGGG
SRLRDAGWLAVAVADRPVAAVSARVRLAAVIDEETACAAARALYSSGEEVRWSDGDVVAR
SVTRLGAIELAARPLSAPDPGLLRDAVVSGLRREGFGLLRWSAAATSLRQRMAFLHRELG
APWPDVSDAALLERVEEWLGVELGRARRRADLARVDAGQALGRLLPWASGDAARFDELAP
ERIGVPSGSRVRVDYGGEQPVLAVKLQELFGLQESPRVAGGRVPVLVHLLSPAGRPAAVT
ADLASFWRDGYRSVRAELRGRYPKHPWPEDPSAAEPTRHTSARLKRG
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgccgtgacgcccttgaccagttgcccgtccgtaccgcgctgcccgcgttgcgt
gccgccctcgacgggcccggcacggcggtgctgtgcgccccgccgggcaccggcaagacg
acgctggtgccgctggacctggccggtctgtgcggtgaggggccggtgcggcgggtgctg
gtcgccgagccgcggcggatcgcggcccgtgcggccgcgcggcggatggcctggctgctg
ggcgagcgggtcggggagcaggtcgggttcacggtgcggggtgagcgccgggccgggccg
cgtaccaccgtggaagtcgtgaccaccggcgtgttgcttcagcggctccagcgcgatccg
gagctggcgggcgtcgatgtggtggtgctcgacgagtgccatgagcggcatctggacgcc
gatacctccgcggcgttcctgctggatgtacgggagacgctgcggcccgagctgcggctg
gtggcggcgtcggcgacgacggacgccgagggatgggcgcggctgctgggcggcccggag
ggcgcggcgccggtggtcgaggcggcgggtgtgtcgcatcccgtgggggtcgtgtgggcc
ccgccggagcggccggtgcggccggcgcacggcatgcgggtcgatccggcgctgctggcg
catgtggcggcagtggtacggcgggcattgcgcgagcagacgggtgatgtgctgtgtttc
ctccccggtgtcggggagatcgggcgggtcgccggggagctggcgggggtggatgccgag
gtgctccaggtgcacgggcgggcgccggccgaggtgcaggacgcggtgctggcgggcggg
agcggcgtccgcagagtcgtgctggcgacgtcggtggcggagtccagcctgaccgtgccg
ggtgtgcgggtggtggtggacagcggactggcgcgggtgccgcggacggatcacgcgcgc
gggctcagcgcgctcacgacggtgcgggcctcccgggcggcgggccgtcagcgcgccggc
cgggcggggcgcgaggcgccgggagtggtgtaccgctgctggtcggagggtgaggacggg
cggctgccggccttccccgatccggagatcaaggtggccgatctgacggcgttcgcgttg
cagtcggcctgctggggcgatccgacggccggcgggctcgccctgctcgacgcgccgcct
gccggtgcgctggccgcggcacgggaggtgctgacggcgatcggcgcggtggacggggcc
ggccgggcgacggggcggggcgggcggatggcgcggatcgggctgcatccccggctggcg
cgcgccctgctggacggcgcgcccgaggtcggtgtgcggcgcgccgcggaggtggtcgcc
ctgttgagcgaggagccgccgcgggcgtacggggatgatctggcggcggcgtggcgcacg
gcgcgtcggggtggcgatgcgtacgcggcgaggtggcgtcaggaggcgcggcgcttggcg
tcggcggccggggagccgtcggccgggtcgggtgcgggcggccgtggcggctccgcggcg
gacgcgggtgcggacgcgggcggcggccgtaccggaggcgggggcggcgcggcagccgcc
tccgaggatgcggtcgccggtctcattgccgcgttggcgttcccggaacgggtggcgcga
gcccggggggccgggagtttcctcatggcgtccgggaccggggccgatgtggccggggcg
ggcacgggggcgcaggccgggtgggggcatcgcgcgggctccgcgggcgacggtggcggg
tcgaggctgcgggatgcggggtggctggcggttgcggtggcggaccggccggtggcggcg
gtgtccgcgcgggtgcggctcgcggcggtgatcgacgaggagacggcgtgtgccgcggca
cgggcgttgtactcgtcgggtgaagaggtgcgctggtcggacggggatgtggtggccagg
agcgtgacacggctgggggcgatcgagctggcggcccggccgctgtccgcgcccgacccc
gggctgctgcgggacgcggtggtgtcggggctgcggcgggaggggttcgggctgctgcgg
tggtcggccgccgcgacgtcgttgcggcagcggatggcctttctgcaccgggagttgggc
gcgccgtggcccgatgtctcggatgcggcgctgctggagcgggtcgaggagtggctgggg
gtggagctcgggcgggcgcggcggcgggccgatctggcgcgggtcgacgcggggcaggcg
ctgggccggctgctgccgtgggcgagcggcgacgcggctcgttttgatgagctggcgccg
gagcgtatcggggtgccgagtggttcgcgggtgcgggtggactacggcggtgagcagccc
gtgctggccgtcaagctccaggagttgttcgggcttcaggagtcgccgcgggtggccggc
gggcgggtgcccgtgctggtgcatctgttgtcccccgcggggcgtccggcggccgtcacg
gccgatctcgcctcgttctggcgggacggataccggtccgtacgtgcggagttgcgcggt
cgctatcccaagcatccctggccggaggacccttcggcggccgagccgacccggcacacg
tcggcgcggctcaaacggggctga
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