Streptomyces decoyicus: K7C20_17590
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Entry
K7C20_17590 CDS
T07553
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdw
Streptomyces decoyicus
Brite
KEGG Orthology (KO) [BR:
sdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdw03019
]
K7C20_17590 (hrpA)
Enzymes [BR:
sdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K7C20_17590 (hrpA)
Messenger RNA biogenesis [BR:
sdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K7C20_17590 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_16
NACHT
PhoH
AAA_25
TsaE
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QZY16840
LinkDB
All DBs
Position
4028116..4032225
Genome browser
AA seq
1369 aa
AA seq
DB search
MSSQPASALPDGTAPALPGTPAPTLHALLERLPELMLRDQQRLGRRLDGARRIRKPEARA
AVLAEISDGIDEAELRVAQRRAAVPEIRYPEELPVSQKKDEILAAIRDHQVVIVAGETGS
GKTTQIPKICLELGRGIRGLIGHTQPRRIAARTVAERVAEELRTPLGEAVGWKVRFTDQV
GGDTLVKLMTDGILLAEIQTDRELRQYDTIIIDEAHERSLNIDFILGYLAQLLPRRPDLK
VVITSATIDPERFARHFGSFASVGAAPHRAGSPAAPDASGSDDEAKPTAPVVEVSGRTYP
VEVRYRPLLEEGGQDSDRDQITAICDAVDELQLEGPGDILVFLSGEREIRDTADALNKKA
LPFTEVLPLYARLSHAEQHRVFQRHTGRRIVLATNVAETSLTVPGIRYVIDPGMARISRY
SYRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLSRPEFTDAEILRTNLA
SVILQMTAAGLGDIEKFPFIDPPDRRNIKDGVDLLSELGALDSKQKDPKKRLTPLGRKLS
QLPVDPRLARMVLEADRNGCVREVMVIAAALSIQDPRERPADKQQQADQQHARFKDETSD
FLAFLNLWRYIREQQKELSSSAFRRMCRSEFLNYLRIREWQDIYSQLRSVAKTMGIHLSE
EDAAPDHIHTSLLSGLLSHIGIKDTDAKNEYLGARSAKFAVFPGSALFKKPPRWVMSAEL
VETSRLWARVNAKIEPEWIEPLAQHLVKRTYSEPHWEQKMAAVMAYERVTLYGVPIVAQR
KIAYGRIDPETSRDLFIRNALVEGDWRTHHQFFHDNRKLLGEVEELEHRARRRDILVDDE
TLFDFYDQRIPADVVSGAHFDAWWKKQQREEPELLNFEHSMLINESAEAVTKDDYPDSWR
QGKLKFKVTYQFEPGADADGVTVHIPLQVLNQVSSEGFDWQIPGLREQLVTELIRSLPKP
IRRNYVPAPNFAARFLDSTVPLQGALTTSLAAGLQRMVGVPVDAADFDPGKIPDHLKITF
RVVDERRRKLAEDKDLEALQLELKPKTRAAISRAFEQAAERPAGDRKGGAGSGPAPAGPE
QRTGLTSWTIGTLPRTFETRRAGQPLKAYPALVDEGSSVAVRLFDTEAEQLTAMWAGTRR
LILLNIPSNPAKFAQGKLSNQQKLALSRNPHGSIAALFEDCVTAAADRLIAARGGPAWDE
ESFRKLFDAVRADLVDVTLKTIQQVQEVLAAWQACERRLKETTFPSLLPSLTDIKEQLAA
LIKPGFVTAHGAKRLPDLMRYLVAADRRLQQLPTHAERDRTRMAKVKEMQDEYAWLLEQF
PQGRPVPAAALEIRWMIEELRVSYFAHALGTAYPVSDKRIVKAVDAAAP
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtcagcctgcctccgccctgcccgacggcactgctcccgccctgccgggcacc
cctgctcccaccctccacgccctgctggagcggctgcccgagctgatgctgcgcgatcag
cagcggctgggacgccggctcgacggcgcgcgccggatccgtaagcccgaagcccgggcg
gccgtcctcgccgagatctccgacggcatcgacgaagccgagctgcgggtcgcccagcgg
cgcgccgcggtgcccgagatcaggtatccggaagagctgccggtcagccagaagaaggac
gagatcctcgccgcgatccgcgatcaccaggtcgtgatcgtcgccggtgagaccggctcc
ggcaagacgacgcagatccccaagatctgtctggagctcggccgcggcatccggggcctg
atcgggcacacccagccccgccggatcgcggcccgtacggtcgccgagcgggtggccgag
gagctgaggactccgctgggcgaggcggtcggctggaaggtccggttcacggaccaggtc
ggcggcgacaccctcgtcaagctgatgacggacggcatcctgctcgccgagatccagacg
gaccgcgagctgcgccagtacgacacgatcatcatcgacgaggcccacgagcgcagcctc
aacatcgacttcatcctcggctatctggcccagctgctgccccggcgcccggacctcaag
gtcgtcatcacctccgcgaccatcgacccggagcggttcgcgcggcacttcggcagcttc
gcgtccgtaggggcggcgccgcaccgcgccggctccccggctgccccggacgcctccggg
agcgacgacgaggcgaagccgaccgcgccggtcgtcgaggtctccggccgtacgtacccg
gtggaggtgcgctaccgcccgctgctggaggagggtggccaggactcggaccgcgaccag
atcaccgcgatctgcgacgccgtggacgagctccagttggaggggcccggagacatcctg
gtcttcctctccggcgagcgggagatccgcgacaccgcggacgcgctcaacaagaaggcc
ctgccgttcaccgaagtcctccccctgtacgcgcggctgtcgcacgccgagcagcaccgc
gtcttccagcggcatacgggcagacggatcgtgctggccacgaacgtcgccgagacctcg
ctgaccgtcccgggcatccggtacgtcatcgacccgggcatggcccgtatctcccgctac
agctaccgcaccaaggtccagcggctgcccatcgagccggtctcgcaggccagcgccaat
cagcgcaagggccgctgcggccgtaccagcgacggcatctgcatccgcctctactccgag
gacgacttcctctcccgtcccgagttcacggacgcggagattctccggacgaacctcgcc
tccgtcatcctccagatgaccgcggccggcctcggcgacatcgagaagttcccgttcatc
gacccgccggaccgccgcaacatcaaggacggcgtcgacctgctgagcgagctcggcgcg
ctcgacagcaagcagaaggaccccaagaagcgcctgaccccgctcggccgcaagctctcc
cagctgccggtcgacccccggctggcgcggatggtgctggaggcggaccgcaacggctgt
gtccgcgaggtcatggtcatcgcggcggcgctgtccatccaggacccgcgcgagcggccc
gccgacaagcagcagcaggccgatcagcagcacgcccgcttcaaggacgagacctccgac
ttcctcgccttcctcaacctctggcgctatatccgcgagcagcagaaggagctgtcctcc
tcggccttccgccgcatgtgccggagtgaattcctgaactatctccggatacgcgagtgg
caggacatctactcccagctgcgttcggtcgccaagaccatgggcattcacctcagcgag
gaggatgcggcccctgaccacatccacacctccctgctttctggtttgctctcgcacatc
ggcatcaaggacacggacgccaagaacgaatatctcggcgcccgcagcgccaagttcgcg
gtgttccccggctccgcgctcttcaagaagccgccgcgctgggtgatgtccgccgagctg
gtcgagacgtcccgcctgtgggcacgggtgaatgcgaagatcgagccggagtggatcgag
ccgctcgcccagcacctggtcaagcggacatacagcgagccgcactgggaacagaagatg
gccgcggtgatggcgtacgagcgggtgacgctctacggcgtcccgatcgtcgcccagcgc
aagatcgcctacggccgtatcgacccggagacctcgcgggatctgttcatccgcaacgcc
ctggtcgagggcgactggcgcacccaccaccagttcttccatgacaaccgcaaactcctc
ggcgaggtcgaggaattggagcaccgcgcccggcgccgcgacattctcgtcgacgacgag
acgctcttcgacttctacgaccagcgcattccggccgatgtggtctccggcgcgcacttc
gacgcctggtggaagaagcagcagcgggaagagccggagctgctgaacttcgagcactcg
atgctcatcaacgaatccgccgaggccgtcacgaaggacgactacccggattcctggcgg
cagggaaagctgaagttcaaggtcacctaccagttcgagccgggcgccgacgccgacggc
gtgaccgtccacatccccctccaggtcctcaaccaggtctcctccgagggcttcgactgg
cagatcccgggcctgcgcgagcagctggtgacggagctgatccggtcacttcccaagccg
atccggcgcaactacgtcccggcaccgaacttcgccgcccgcttcctggactccacggtc
cccctccagggcgccctgacgacgtctctggccgcgggattgcagcggatggtgggcgta
ccggtcgacgcagcggacttcgacccgggcaagatccccgaccacctcaagatcaccttc
cgggtcgtcgacgagcgccgccgcaagctcgccgaggacaaggacctggaggcgctccag
ctggagctcaagccgaagaccagggcggccatctccagggccttcgagcaggccgccgag
cggcccgccggggaccgcaagggcggcgcgggctccggaccggccccggccggcccggag
cagcggaccgggctgacgtcctggacgatcggcacgctgccgcgcaccttcgagacccgg
cgtgccggccagccgctgaaggcgtacccggcgctggtcgacgagggcagcagcgtcgcc
gtccgcctcttcgacaccgaggccgagcagctcacggcgatgtgggcgggcacccgccgg
ctgatcctgctcaacatcccgtccaatccggccaagttcgcgcagggcaagctgagcaat
cagcagaagctggcgctgtcccgtaatccgcacggctccatcgcggcgctcttcgaggac
tgcgtgaccgccgccgccgaccgcctgatcgcggcccggggcggcccggcatgggacgag
gagtccttccggaagctgttcgacgcggtccgcgccgatctggtggacgtcacgctcaag
accatccagcaggtccaggaggtgctggccgcctggcaggcgtgcgagcgccggctgaag
gagacgacgttcccctcgctgctgccgtccctcacggacatcaaggagcagctggcggcg
ctgatcaagccgggcttcgtgacggcgcacggcgccaagcggctgccggacctaatgcgc
tatctggtggccgccgaccgccgcctccagcagctgcccacccacgccgagcgggaccgc
acccgtatggcgaaggtgaaggagatgcaggacgaatacgcctggctgctggagcagttc
ccgcagggccgcccggtgccggccgcggccctggagatccgctggatgatcgaggagctc
cgggtgagctacttcgcgcacgctctggggaccgcgtacccggtctcggacaagcgcatc
gtgaaggccgtggacgccgccgcgccgtag
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