Streptomyces decoyicus: K7C20_27050
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Entry
K7C20_27050 CDS
T07553
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sdw
Streptomyces decoyicus
Pathway
sdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K7C20_27050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdw03019
]
K7C20_27050
Messenger RNA biogenesis [BR:
sdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K7C20_27050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
QZY18456
LinkDB
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Position
6121474..6123159
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AA seq
561 aa
AA seq
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MSHPHPELGAPPKLPKGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFTSIRDRLDDIDGIVLTHGHEDHIGGVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVKEGHTERIGSFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDRRLTDLPAFARLGEEGIDLLLSDSTNAEVPGFVPPERDISNVLRTVFANAQKRIIVAS
FASHVHRIQQILDAAHEYGRRVAFVGRSMVRNMGIARELGYLKVPAGLVVDVKTLDDLPD
DEVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GADVVHKGNAKVHVSGHASAGELLYFYNICKPKNLMPVHGEWRHLRANAELGALTGVPKD
RIVIAEDGVVVDMVNGVAKIVGKVQAGYVYVDGLSVGDVTETHLKDRRILGDEGIISVFV
VVDSSTGKIVGGPDLHARGSGIEDSTLLGVVPKIDEALAKAAQDGVADAHQLQQLIRRSV
GKWVSDNYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgagctcggcgccccgccgaagcttcccaagggtggcctgcgc
gtcacccccctcggcggcctgggtgaaatcggccgcaacatgacggtcttcgaatacggc
ggccggctgctgatcgtcgactgcggagtgcttttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttcacgtccatcagggatcgcctcgacgacatcgacggcatc
gtgctcacccacggccacgaggaccacatcggtggtgtcccctatctcctgcgcgagaag
ccggacatccccctcatcggttcgaagctgaccctcgccctcatcgaggccaagcttcag
gagcaccgcatccgcccctacaccctcgaggtgaaggaagggcacacggagcggatcggc
tccttcgactgcgagttcgtcgcggtcaaccactccatccccgacgccctggccgtcgcc
atccgcacccccgcgggcatggtcgtgcacaccggcgacttcaagatggaccagctcccg
ctggaccgccgcctgaccgacctccccgccttcgcgcggctcggcgaggaaggcatcgac
cttctcctctccgactccacgaacgccgaggtcccgggcttcgtcccgcccgagcgggac
atctccaatgtcctgcgcacggtgttcgcgaacgcccagaagcgcatcatcgtggccagc
ttcgccagccatgtgcaccgcatccagcagatcctcgacgcggcgcacgagtacggccgc
cgggtcgccttcgtcggccgttcgatggtccgcaacatgggcatcgcccgcgagctgggg
tacctgaaggtccccgccggcctggtcgtcgacgtcaagaccctcgacgatctccccgac
gacgaggtcgtgctggtctgcacggggtcccagggcgagccgatggcagccctctcccgg
atggccaaccgcgaccaccagatccggatcgtccagggcgacaccgtgatcctggcgtcc
tccctcatcccgggcaacgagaacgcggtctaccgcgtgatcaacggcctcacccgatgg
ggcgcggacgtcgtccacaagggcaatgccaaggtccatgtctcgggccacgcctcggcc
ggcgagctgctgtacttctacaacatctgcaagccgaagaacctcatgccggtacacggc
gaatggcgccatctgcgcgccaacgccgaactgggtgcgctgaccggtgtaccgaaggac
cggatcgtcatcgccgaggacggtgtcgtggtcgacatggtcaacggcgtcgccaagatc
gtcggcaaggtccaggcgggctacgtctatgtcgacggcctctccgtcggcgatgtcacg
gaaacccatctgaaggaccgccgcatcctgggcgacgaaggcatcatctcggtcttcgtg
gtcgtggacagcagcaccggcaagatcgtcggcggcccggacctgcatgcgcgcggctcc
ggcatcgaagactccaccctgttgggcgtggtccccaagatcgatgaggccttggccaag
gcggctcaggacggcgtcgcggacgcgcaccagctccagcagctgatccgccgctcggtc
ggcaagtgggtctcggacaactaccgccgccgcccgatgatcctccccgtggtcgtcgag
gtctga
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