Streptomyces decoyicus: K7C20_33465
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Entry
K7C20_33465 CDS
T07553
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sdw
Streptomyces decoyicus
Pathway
sdw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
K7C20_33465 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdw03400
]
K7C20_33465 (ligD)
Enzymes [BR:
sdw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
K7C20_33465 (ligD)
DNA repair and recombination proteins [BR:
sdw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
K7C20_33465 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
NAD_binding_2
Motif
Other DBs
NCBI-ProteinID:
QZY19528
LinkDB
All DBs
Position
7689328..7690275
Genome browser
AA seq
315 aa
AA seq
DB search
MSPITVVEGRRLSLTNLDKVLYAETGTTKGEVLHYCTTVAGPLLAHLHDRPLSFLRYPDG
PDGQRFFTKNVPPGTPSWVKTCEVPHSTSGPARQVLLQDLPALVWAANLVVELHTPQWTC
QAPGIADRLVLDLDPGAPATIVECCTAARWLHDRLAADGLDVYAKTSGSKGLHLIVAIEP
TPSERATAYARTLAVEAAAALPDLVVHKMTKALRPGKVFIDFSQNAAAKTTAVAYTLRAR
PTPTVSAPVTWDEIAECSEPSQLTFLFSEIAPRCAHHGDLLAPLLDPDRARPLPRAKPSR
APAAPNRPSPTRGST
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgatcactgtcgtggaggggcgacgcctctcgctgaccaacctggacaaggtc
ctctatgccgagaccggcaccacgaagggcgaggtgctgcactactgcaccacggtcgca
ggcccgctgctcgcccacctccacgaccggccgctctccttcctgcgctatcccgacgga
ccggacggccagcgcttcttcaccaagaacgtgccgcccggcacaccctcctgggtgaag
acctgcgaggtcccccattcgacgtccgggcccgcccggcaggtcctgctccaggacctg
cccgcgctggtctgggccgcgaacctggtcgtcgaactgcacaccccccagtggacgtgc
caggccccgggcatcgccgaccgcctcgtcctcgatctcgatcccggcgccccggccacc
atcgtggagtgctgcaccgcggcccggtggctgcacgaccggctggccgccgacggcctg
gacgtctacgccaagaccagcggttccaagggcctgcacctcatcgtggccatcgaaccc
accccctccgagcgggccaccgcctacgccaggaccctcgccgtcgaggccgcggcggcc
ctccccgaccttgtcgtgcacaagatgaccaaggccctgcgccccggcaaggtcttcatc
gacttctcccagaacgccgccgccaagaccaccgccgtcgcctacaccctgcgcgcccgc
cccacccccacagtctccgccccggtcacctgggacgagatcgccgagtgcagcgaaccg
tctcaactcaccttcctcttcagtgagatcgcaccccgctgcgcacaccacggcgacctg
ctcgccccgctcctcgatcccgaccgggcccgtccactgcctcgtgcgaagccctcccgt
gcgcccgcggcacccaatcggcccagtcccacccggggttcgacgtag
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