Streptomyces dengpaensis: C4B68_02020
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Entry
C4B68_02020 CDS
T06611
Name
(GenBank) heavy metal transporter
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdx
Streptomyces dengpaensis
Pathway
sdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4B68_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdx03019
]
C4B68_02020
03009 Ribosome biogenesis [BR:
sdx03009
]
C4B68_02020
Enzymes [BR:
sdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C4B68_02020
Messenger RNA biogenesis [BR:
sdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C4B68_02020
Ribosome biogenesis [BR:
sdx03009
]
Prokaryotic type
rRNA helicases
C4B68_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WSD
Motif
Other DBs
NCBI-ProteinID:
AVH54785
LinkDB
All DBs
Position
433967..435670
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AA seq
567 aa
AA seq
DB search
MATDTTAEEEQVGFADLDLDAELVRALSALGYEEPTPIQREAIPPLLEGHDLLGQAATGT
GKTAAFALPVLQRIPRDRKDGLPAALVLVPTRELAIQVSEAVHRYGTGLGIRVLPVYGGQ
PIGRQLRSLERGVDVVVATPGRALDHIARGTLRLDGLQTVVLDEADEMLDMGFSEDIDAI
LENVPEERQTVLFSATMPGRIDSMARRHLSDPVRIQIEREAPAPGEAPKTRESAYVIRRA
QKPAALGRLLDLEAPEAAIVFCRTREEVDQLSETLNGRGYRAEALHGGLSQEQRDRVMGR
LRGGTADLLVATDVAARGIDVEHLTHVINYDVPSAPESYVHRIGRVGRAGREGVAITLAE
PREHRQLKAIERATGRKIPVEMVPSVADLRARRLELTRAALHESILEDEDLERFRVVVEN
LADEFDVMDVALAAVKLAHETGGAAIDEEEIPEVAPLHRDKDRSRERGRGGERGPRGRKG
GGGPQRGMTRLFVGAGRSAGIRPQDLVGAITGESQLNGRDIGSIEIADRFSLVEVPENAA
TDVIGALRGSTIKGRKPTVRRERAQTR
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagacaccaccgccgaagaagaacaggtcggcttcgctgatctcgacttggac
gcggagctcgtgcgggcgctgtccgcactgggctacgaagagcccaccccgatccagcgg
gaggcgatccctcccctgttggagggccatgatctgctggggcaggctgctacgggcacc
gggaagaccgccgcattcgccctgccggtgctgcagcgcattccccgggaccgcaaggat
gggctaccagccgccctggtactggtgcccacccgggagctggccatccaggtgtcggag
gccgtccaccgctacggcaccggcctgggcatccgtgtcctgcctgtctacggcgggcag
ccgatcgggcggcagctgcgctccctggaacgcggcgtcgacgtggtggtggccaccccg
gggcgggcactggaccacatcgcgcgcgggacactgcggctcgacggtctgcaaaccgtc
gtcctggacgaggccgacgaaatgcttgacatgggcttctccgaggacatcgacgcgatc
ctggagaacgtgccggaagagcgccagacggtgctgttctcagcgacgatgccgggccgt
atcgactccatggcccggcgtcacctgtccgatccggtccgtatccagatcgagcgggaa
gcgccggccccgggcgaggctccgaagacaagggaatccgcctacgtcatacggcgggcg
cagaaacccgccgcgctcgggaggctgctggacctggaggcacccgaggccgccatcgtg
ttctgccgtacgcgcgaggaggtggaccagctttccgagaccctcaacgggcgcggctac
cgggccgaagccctgcacggcggactgagccaggaacagcgcgaccgcgtgatgggccgg
ctgcgcggcggcaccgcggacctgctggtcgccaccgacgtcgccgcccgcggcatcgac
gtcgaacacctcacgcatgtgatcaattacgacgtgccctccgcgccggagtcctacgtc
caccggatcggccgggtcgggcgcgcgggacgcgagggcgtggcgatcacactggcggag
ccacgcgaacaccggcagctcaaggcaatcgagcgggcgaccggacgcaaaatccccgtg
gagatggtgccgtccgtcgcggatctgcgggccaggcgcctggagctgacgcgggccgcg
ctgcacgagagcatcctggaggacgaggacctggaacggttccgggtcgtggtggagaac
ctcgccgacgagttcgatgtgatggatgtggcgctggccgcggtgaagctggcgcacgag
acgggtggcgccgccatcgacgaggaagagatccccgaggtcgcccccctgcaccgagac
aaggacaggagccgggagaggggcaggggcggggagcgcggcccgcgcggacgcaagggc
ggcggcgggccccaacggggcatgacacgcctgttcgtcggcgccggccgcagcgccggc
atccggccgcaggacctcgtcggcgccatcaccggcgaatcgcaactcaacggccgggac
atcggctccatcgagatcgccgaccgcttctccctggtggaggtccccgagaacgcggca
accgacgtcatcggcgccctgcgcggcagcaccatcaagggacgcaaacccaccgtccgc
cgggagcgggcccagacccgctga
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