Streptomyces dengpaensis: C4B68_03920
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Entry
C4B68_03920 CDS
T06611
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sdx
Streptomyces dengpaensis
Pathway
sdx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C4B68_03920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdx03400
]
C4B68_03920
Enzymes [BR:
sdx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C4B68_03920
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C4B68_03920
DNA repair and recombination proteins [BR:
sdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C4B68_03920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
NFACT_N
Ribosomal_S13
Zn_ribbon_RRN7
Zn_ribbon_8
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AVH55088
LinkDB
All DBs
Position
complement(816986..817846)
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AA seq
286 aa
AA seq
DB search
MPELPEVEALKDFLADHLVGREVVRVLPVAISVLKTYDPPVTALEGREVTAVHRYGKFLD
IETDGPHFVTHLARAGWLHWRDTLPDGPPRPGKGPLALRVALATGEGFDLTEAGTQKRLA
VYVVRDPAEIPGVARLGPDPLADDFDETRFAKLLEGERRQLKGALRDQSLIAGVGNAYSD
EILHAAKMSPFKLAASLTPEEIRRLYEALRSTLTEAVERSHGLAAGRLKAEKKSGLRVHG
RTGEPCPVCGDTIREVSFSDSTLQYCPTCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaggtcgaagcgctcaaggacttcctggccgaccatctcgtcggc
cgtgaggtcgtgcgcgtgctgcccgtcgccatcagtgtcctcaagacgtacgacccgccc
gtcaccgccctggagggacgcgaggtcacggccgtgcaccggtatggcaagttcctcgac
atcgagacggacggcccgcacttcgtgacgcacctggcccgcgcgggctggctgcactgg
agggacacgctgcccgacggaccgccgcgccccggcaagggcccgctcgcgctgcgcgtc
gcgctggcgaccggtgagggtttcgacctcaccgaggccggcacccagaagcggctcgcg
gtgtacgtcgtgcgggaccccgcggagatccccggcgtggcccgcctcggccccgacccg
cttgccgatgacttcgacgagacgcggttcgcgaaactgctggagggcgagcggcgccaa
cttaagggcgcgctgcgcgaccagagcctgatcgcgggcgtcgggaacgcgtacagcgac
gagatcctgcacgcggccaagatgtcccccttcaagctcgccgcctcgctgacacccgag
gagatacggcgtctgtacgaggccctgcgttcgaccctcaccgaggccgtcgagcgctcc
cacggtctggccgccggacgtctgaaggcggagaagaagagcggactgcgggtgcacggc
aggacgggcgagccctgcccggtgtgcggcgacaccatccgcgaggtctccttcagcgac
tccacgctgcagtactgcccgacctgccagaccggcggcaaaccgctcgcggaccgcagg
atgtcccggctgctcaagtag
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