Streptomyces dengpaensis: C4B68_12520
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Entry
C4B68_12520 CDS
T06611
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sdx
Streptomyces dengpaensis
Pathway
sdx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C4B68_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdx03021
]
C4B68_12520
03019 Messenger RNA biogenesis [BR:
sdx03019
]
C4B68_12520
Transcription machinery [BR:
sdx03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C4B68_12520
Messenger RNA biogenesis [BR:
sdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C4B68_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
ResIII
AAA_22
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AVH56466
UniProt:
A0ABN5HZ99
LinkDB
All DBs
Position
complement(2787171..2789282)
Genome browser
AA seq
703 aa
AA seq
DB search
MSDTTDLMGARVEETVAAPATDASAPATGAGSRRRRGTGLEGMVLAELQQVASGLGIRGT
ARMRKSQLIEVIKEAQAGGTSQALSGSGGGGAPAKAASSPAGEATEAKPKRRATSKARTG
DEAAAAEKQAAEPAAEKAVAQQQIEIPGQPAGGPSRDGGTSRASEAERGGEAERGGDDAP
AERRRRRATAEAGSPETVAGEAKSEPKAETPVQAQGEDKADAEGADGRQGRRDRRDRDRG
GRDRDRRGKGDEQQGGGQQRQDRQDRQQQGGGRQDRQQRDTGPRADEDGDDFEGGRRGRR
GRYRDRRGRRGRDEIAEPQLAEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQ
VRKNGLRKGDHVTGAVRQPKEGERREKFNALVRLDSVNGMAPEHGRGRPEFNKLTPLYPQ
DRLRLETDPGILTTRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLM
VVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLD
SITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGS
RMDEVIFEEFKGTGNAELKLDRKLADKRIFPAVDVDASGTRKEEILLGNDELAIVWKLRR
VLHALDQQQAIELLLDKMKQTKSNAEFLLQIQKTTPSPGNGND
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgcacgtgtcgaggagaccgttgccgcgcccgcc
acggacgcctctgcgcctgccaccggtgccggctcccggcggcgccgcggtaccggcctt
gagggcatggtgctggccgagctgcagcaggtcgcatccggcctcggcatcaggggcacc
gcgcgtatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggctgggggcacc
tcccaggccctttcgggctctgggggagggggagccccggccaaggccgcgtcctctccc
gccggcgaggccaccgaggccaagccgaagcgccgggccacctcgaaggctcgtacgggc
gatgaggccgccgcggccgagaagcaggcggcggagcccgccgccgagaaggccgtggcc
cagcagcagatcgagatccccggccagccggctgggggcccctcccgcgatgggggtacc
tcccgcgcgagcgaagccgagcgtgggggagaagccgagcgcggcggagacgacgctccc
gcggagcgccgccgtcgccgtgccaccgccgaggcgggcagccccgagacggtcgccggc
gaggcgaagagcgagccgaaggccgagaccccggtccaggcgcagggcgaggacaaggcc
gacgccgagggcgccgacggccgtcagggccgccgtgaccgccgtgaccgcgaccgtggc
ggccgtgaccgcgaccgtcgtggcaagggcgacgagcagcagggcggcggccagcagcgc
caggaccgccaggaccgtcagcagcagggcggcggccgtcaggaccgccagcagcgcgac
accgggccgcgggccgatgaggacggggacgacttcgagggtggccgccgcggccgtcgc
gggcgctaccgggaccgccggggccgtcgtggccgcgacgagatcgccgagccgcagctc
gccgaggacgacgtcctgatccccgtcgcgggcatcctggacatcctcgacaactacgcc
ttcatccgtacgtcgggctacctgccgggccccaacgacgtttacgtctccctcgcccag
gtccgcaagaacggcctgcgcaagggtgaccacgtcaccggcgcggtccgtcagcccaag
gagggtgagcgccgcgagaagttcaacgcgctggtccgcctggactccgtcaacggcatg
gcgcccgaacacggccgtggccgcccggagttcaacaagctgacgccgctgtacccgcag
gaccgcctccgcctggagacggacccgggcatcctcaccacccgcatcatcgacctcgtt
gcgccgatcggtaagggccagcgcggtctgatcgtggccccgccgaagaccggcaagacc
atgatcatgcaggcgatcgccaacgcgatcacgcacaacaaccccgagtgccacctgatg
gtcgtcctggtcgacgagcgtccggaagaggtcaccgacatgcagcggtcggtcaagggc
gaggtcatctcctcgaccttcgaccgcccggccgaggaccacaccacggtcgccgaactg
gcgattgagcgtgccaagcgtcttgtggagctgggtcacgacgtcgtcgtgctgctcgac
tcgatcacgcgtctgggccgtgcgtacaacctcgccgccccggcctccggccgcatcctg
tccggtggtgtcgactcgacggccctctacccgccgaagcgcttcttcggtgcggcgcgc
aacatcgaggacggcggctcgctgaccatcctcgcgaccgcgctcgtcgacaccgggtcc
cgcatggacgaggtgatcttcgaggagttcaagggcaccggcaacgcggagctcaagctc
gaccggaagctcgccgacaagcgcatcttcccggcggtggacgtcgacgcgtccggtacc
cgtaaggaagagatcctgctcggcaacgacgagctcgccatcgtctggaagctgcgccgg
gtgctgcacgcgctcgaccagcagcaggcgatcgagctgctgctggacaagatgaaacag
acgaagtcgaacgccgagttcctgcttcagatccagaagaccacgccgtcgccgggcaac
ggcaacgactga
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