Streptomyces dengpaensis: C4B68_18010
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Entry
C4B68_18010 CDS
T06611
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sdx
Streptomyces dengpaensis
Brite
KEGG Orthology (KO) [BR:
sdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdx03032
]
C4B68_18010 (topA)
03400 DNA repair and recombination proteins [BR:
sdx03400
]
C4B68_18010 (topA)
Enzymes [BR:
sdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
C4B68_18010 (topA)
DNA replication proteins [BR:
sdx03032
]
Prokaryotic type
DNA Topoisomerases
C4B68_18010 (topA)
DNA repair and recombination proteins [BR:
sdx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
C4B68_18010 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Extensin_1
Motif
Other DBs
NCBI-ProteinID:
AVH57359
LinkDB
All DBs
Position
complement(3932467..3935286)
Genome browser
AA seq
939 aa
AA seq
DB search
MSPTSDTAHGGRRLVIVESPAKAKTIKGYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGE
VRRLGVDVEHDFQPIYVVNADKRAQVKKLKDLLKDSDELFLATDEDREGEAIAWHLLEVL
KPKVPVKRMVFHEITKDAIREAVANPRDLNKRMVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFGTGRVGDNSDPSSLVARLASVD
GRRVAQGRDFDSLGRLKSANTLHLDEANARALAAALENTDFAVRSVESKPYRRSPYAPFR
TTTLQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTTLSDTAVAAARAQVTQLYGA
GYLPAQPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFKLYELIWKRTVASQMK
DATGNSVTVKIGGTAADGRDVEFTASGKTITFHGFLKAYVEGADDPNAELDDRERRLPQV
NEGDPLSAEEITVDGHATKPPARYTEASLVKELEEREIGRPSTYASIIGTILDRGYVFKK
GTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIARGEAQSVPWLKRFYFGEGV
GDGGAADAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGNDIVLRVGRYGPYIERGEKD
AENHQRADIPEDLAPDELSVELAEELLAKPSGDFELGADPATGHQIVAKDGRYGPYVTEV
LPEGTPKTGKNAVKPRTASLFKSMSLDTVTLEDALKLMSLPRIVGTDAEGVEITAQNGRY
GPYLKKGTDSRSLQSEDQLFTITLEEALEIYSQPKQRGRAAAKPPLKELGEDPVSGKPVV
VKDGRFGPYVTDGETNATLRSGDSVEDITAERGYELLAEKRAKGPAKKTAAKKTAAKKTA
AKKAPAKKTAAKKTTTSKTAAKKAPAKKAAAKKTAASEG
NT seq
2820 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgacaccgcacacggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagggctacctcggccccggctatgtcgtcgaagcgagcgtc
gggcacatccgcgacctcccgaacggcgccgcggaggtgccggagaagtacaccggcgag
gtgcgccgcctcggcgtcgacgtcgagcatgacttccagccgatctacgtggtcaacgct
gacaagagagcccaggtcaagaagctcaaggacctgctgaaggattccgacgaactcttc
ctcgccaccgatgaggaccgcgagggcgaagccatcgcgtggcacctcctggaggtcctg
aagcccaaggtcccggtcaagcggatggtgttccacgagatcaccaaggacgcgatccgc
gaggccgtggccaacccgcgcgacctgaacaagcgcatggtcgacgcccaggagacccgc
cgcatcctcgaccgcctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccccgtctgtcggcgggccgtgtccagtccgtggcgacccgcctcgtcgtcgagcgcgag
cgcgagcgcatcgcgttccgctccgccgagtactgggacctgaccggcaccttcggcacc
ggccgcgtcggcgacaacagcgacccgtcctcgctggtcgcccgcctggcgtcggtcgac
ggccggcgcgtcgcccagggccgcgacttcgactcgctgggccggctgaagagcgcgaac
acgctgcacctggacgaggcgaacgcccgcgcgctcgccgccgccctggagaacaccgac
ttcgccgtccgctcggtcgagtccaagccgtaccgccgctcgccgtacgcgccgttccgt
acgacgacgcttcagcaggaggcctcgcgcaagctcggcttcggcgccaaggcgaccatg
caggtggcccagaagctgtacgagaacggcttcatcacctacatgcgtacggactccacg
accctctcggacaccgcggtcgccgccgcccgtgcccaggtcacgcagctgtacggcgcc
ggctacctgccggcccagccgcgtacgtacgccgggaaggtcaagaacgcgcaggaggcg
cacgaggcgatccgtccctcgggtgatcgtttccgcaccccggccgagacgggtctgacc
ggcgaccagttcaagctgtacgaactgatctggaagcggaccgtcgcctcccagatgaag
gacgcgaccgggaacagcgtgacggtcaagatcggtggcacggccgccgacggccgcgac
gtcgagttcaccgcgtccggcaagacgatcaccttccacggcttcctcaaggcgtacgtc
gagggcgcggacgacccgaacgccgagctcgacgaccgcgagcgccggctgccccaggtc
aacgagggcgacccgctgtccgccgaggagatcacggtcgacgggcacgccaccaagccc
ccggcccgctacaccgaggccagcctggtcaaggagctcgaagagcgcgagatcggccgc
ccgtcgacgtacgcgtcgatcatcggcacgatcctcgaccgcggatacgtgttcaagaag
ggcacggcccttgtgccgtccttcctgtccttcgccgtggtcaacctcctggagaagcac
ttcgggcggctcgtcgactacgacttcacggccaagatggaggacgacctcgaccgcatc
gcgcgcggtgaggcccagtccgtgccgtggctgaagcggttctacttcggcgaaggcgtc
ggcgacggcggcgccgcggacgccggaaacggcgacggggaccacctcggcggcctcaag
gagctcgtcaccgacctgggcgccatcgacgcccgcgaggtgtcgtccttcccggtcggc
aacgacatcgtgctgcgcgtcggccgctacggcccgtacatcgagcgcggcgagaaggac
gcggagaaccaccagcgcgccgacatccccgaggacctggcacccgacgagctgtccgtc
gagctcgcggaggagctgctcgccaagccgagcggcgacttcgagctgggcgccgacccg
gcgacgggccaccagatcgtcgccaaggacggccgctatggcccgtacgtcaccgaggtg
ctccccgagggcaccccgaagacgggcaagaacgccgtcaagccgcgtacggcgtcgctg
ttcaagtcgatgtcactcgacacggtgactctcgaggacgccctcaagctgatgtccctg
ccgcgcatcgtcggcacggacgccgagggcgtggagatcaccgcgcagaacgggcgctac
gggccctacctgaagaagggcacggactcgcgctccctgcagtccgaggaccagctcttc
accatcaccctcgaagaggcgctggagatctactcgcagcccaagcagcggggccgcgcg
gccgccaagccgccgctgaaggagctgggcgaggatccggtcagcgggaagcccgtcgtc
gtcaaggacggccgcttcgggccgtacgtgaccgacggcgagaccaacgcgaccctgcgc
tccggcgacagcgtcgaggacatcaccgccgagcgcggctacgagctgctcgccgagaag
cgcgccaagggccccgccaagaagacggccgcgaagaagaccgccgcgaagaagacggct
gccaagaaggcacctgccaagaaaacggccgcaaagaagacgacgacttcgaagacggcc
gccaagaaggcgcctgcgaagaaggccgccgccaagaagacggctgcttcggagggctga
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