Streptomyces dengpaensis: C4B68_21125
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Entry
C4B68_21125 CDS
T06611
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdx
Streptomyces dengpaensis
Brite
KEGG Orthology (KO) [BR:
sdx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdx03019
]
C4B68_21125
Enzymes [BR:
sdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
C4B68_21125
Messenger RNA biogenesis [BR:
sdx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C4B68_21125
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
T2SSE
nSTAND_NTPase5
NACHT
AAA_16
SLFN-g3_helicase
PhoH
ResIII
NTPase_1
TsaE
MetJ
Motif
Other DBs
NCBI-ProteinID:
AVH57852
UniProt:
A0ABN5I4B3
LinkDB
All DBs
Position
complement(4566571..4570563)
Genome browser
AA seq
1330 aa
AA seq
DB search
MSTHPAPALGDLAPRLAELSLRDAHRLGRRLEGARKIRKPEARSAVLAEIEAEVAKVEGR
MAERRDRVPAVTYPEQLPVSQKKDEIAAAIRDHQVVIVAGETGSGKTTQIPKICLELGRG
VRGMIGHTQPRRIAARTVAERVAEEMDTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIVEVSGRTYPVEVRYRPLLEEDGDDADRDQITAICDAVEELQGEGKGDILVFLS
GEREIRDTADALTKKNYPRAGGAHGQGIEVLPLYARLSHAEQHRVFQPHTGRRIVLATNV
AETSLTVPGIKYVIDPGTARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIR
LYSEDDFLARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQ
ELGALDPAQKDVRKRLTETGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDP
RERPSDKQAQADQQHARFKDETSDFLAFLNLWRYVREQQKERGSSAFRRMCKQEYLNFLR
IREWQDIYSQLRTVAKQMGIHLNEEDAPDQSIHVSLLAGLLSHVGMKDVKNAGGEGGKNT
GKNEYLGARNAKFAIFPGSALFKKPPRFVMSAELVETSRLWARVNAKIEPEWVEPLAEHL
LKRTYSEPHWEKDQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDW
RTHHKFFADNRKLLTEVEELEHRARRRDILVDDETLFDFYDQRVPEHVVSGAHFDSWWKR
KRHDEPELLDFERSMLINEKAGAVTKDDYPDSWRQGRLKFPVTYQFEPGADADGVTVHIP
LQVLNQVTDEGFDWQIPGLREEVVTELIRSLPKPIRRNYVPAPNFAQKFLERAVPLQEPL
TVTMARELKRMVGVPLTADDFDWSRVPDHLKITFRIVDERRRKLAEDKDLEALKLRLKPK
ARQALSQAAAATAERQGGESLERTGLTDWTIGSLTRVFETRRAGQPVKAYPALVDDGDTV
SVRLFDTEAEQAQAMWKGTRRLILRNIPVNPGKFASDKLTNAQKLALSANPHGSIQALFD
DCAMAAADKLIGDFGGPAWDEESYRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQACERRL
KGVRSPVLLANLADVRAQLDGLVKPGFVTKTGLRRLPDLMRYLVAADRRLQQMPTGVQRD
TTRMEKVHEMQDEYAWLLEQLPQGRPIPSSVLDIRWMIEELRVSYFAHALGTAYPVSDKR
IVKAIDAAAP
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatcctgcccccgccctcggcgatctcgccccccgtctggccgagctgtcc
ctgcgcgacgcgcaccggctcgggcgcaggctcgagggcgcgcgcaagatccgcaagccc
gaggcccggtccgccgtgctcgccgagatcgaggcggaggtcgccaaggtcgagggccgg
atggccgagcgtcgtgaccgcgtgcccgccgtcacgtatcccgagcagcttccggtcagc
cagaagaaggacgagatcgcggcagccatccgcgatcaccaggtcgtcatcgtcgcgggt
gagaccgggtccggtaagaccacccagatccccaagatctgtctggagctcgggcgcggc
gtccgcggcatgatcgggcacacccagccccgccgtatcgcggcccgtacggtcgccgag
cgcgtggcggaggagatggacacgccgctgggcgaggccgtcggctggaaggtgcggttc
accgaccaggtgaatcccgacgccaccttcgtcaagctcatgacggacggcatcctgctc
gccgagatccagacggaccgcgagctgcgcgcgtacgacacgatcatcatcgacgaggcc
cacgagcggtccctgaacatcgacttcctgctcgggtatctcgctcagctgctgcccaag
cggcccgacctcaaggtcgtgatcacctccgcgaccatcgaccccgagcggttctcccgg
catttcggcgacgcgccgatcgtcgaggtcagcgggcggacgtacccggtggaggtgcgt
taccggccgctcctcgaagaggacggtgacgacgccgaccgcgaccagatcaccgcgatc
tgcgatgccgtcgaggagctgcagggcgagggcaagggcgacatcctcgtcttcctctcc
ggcgagcgcgagatccgcgacaccgccgacgcactgacgaagaagaactatccccgcgcc
ggaggtgctcatgggcagggcatcgaggtcctgccgctgtacgcccggctctcgcacgcc
gagcagcaccgcgtcttccagccgcacaccggacgcaggatcgttctggcgaccaacgtc
gccgagacctcgctcaccgtcccgggcatcaagtacgtcatcgacccgggcaccgcccgt
atctcccggtacagccaccgcaccaaggtgcagcgcctgcccatcgagcccgtctcgcag
gccagcgccaaccagcgcaagggccgctgcggccgtacgagcgacggtatctgcatccgg
ctgtacagcgaggacgacttcctcgcgcgtcccgagttcacggacgccgagatcctccgt
acgaacctggcgtccgtcatcctccagatgaccgcggccggcctcggcgacatcgagaag
ttcccgttcatcgatccgccggaccaccgcaacatccgcgacggtgtccagctcctccag
gaactgggcgcgttggacccggcccagaaggacgtacgcaagcggctcacggagaccggc
cgcaagctcgcccagctgcccgtcgacccccgcctcgcccgtatggtcctggaggccgac
aagaacggctgcgtacgcgaggtcatggtgatcgcggccgcgctgtccatccaggacccg
cgcgagcgcccgtccgacaagcaggcgcaggcggaccagcagcacgcccgtttcaaggac
gagacgagcgatttcctcgccttcctgaacctgtggcggtacgtccgcgagcagcagaag
gagcggggctcgtccgcgttccgccgtatgtgcaagcaggagtatctgaacttcctgcgg
atccgtgagtggcaggacatctacagccagctgcggaccgtcgccaagcagatgggaatc
cacctcaacgaggaggacgcgcccgaccagagcattcacgtgtccctcctcgccggtctg
ctctcgcacgtcggcatgaaggacgtgaagaacgccgggggggagggtgggaagaacaca
gggaagaacgagtacctgggcgcgcgcaacgccaagttcgcgatcttcccgggttcggcg
ctcttcaagaagccgccgcggttcgtcatgtccgcggagctcgtcgagacctcacggctg
tgggcgcgcgtcaatgccaagatcgagcccgagtgggtcgagcccctggcggagcatctg
ctgaagcgcacgtacagcgaaccgcactgggagaaggaccaggccgcggtgatggcgtac
gagaaggtcacgctgtacggcgtaccgatcgtcgcgcagcgcaaggtgaactacgggcgg
atcgacccggaggtctcccgcgagctgttcatccgcaacgcgctcgtcgagggcgactgg
cgtacgcaccacaagttcttcgccgacaaccgcaaactcctcaccgaggtcgaggagctg
gagcaccgcgcccggcgccgggacatcctggtcgacgacgagacgctcttcgacttctac
gaccagcgggtgcccgaacatgtcgtgtccggcgcgcacttcgactcctggtggaagcgc
aagcgccatgacgagcccgagctcctcgacttcgagcgctccatgctcatcaacgagaag
gcgggcgcggtcaccaaggacgactacccggactcctggcgccaggggaggctcaagttc
cccgtcacctaccagttcgagccgggcgcggacgccgacggcgtcaccgtccacatcccg
ctccaggtcctcaaccaggtcacggacgagggcttcgactggcagatcccgggtctgcgg
gaagaggtcgttacggaactgatccgctcgctcccgaagccgatccggcggaattacgtc
cctgccccgaacttcgcccagaagttcctggagcgggcagtgccgttgcaggagcccctc
accgtgaccatggcgcgcgagctgaagcgcatggtcggtgtgccgctcacggccgacgac
ttcgactggtcccgggtccccgatcacctgaagatcaccttccggatcgtcgacgagcgg
cgccgcaagctcgccgaggacaaggacctggaggcgctgaagctccgcctgaagccgaag
gcgcgccaggcgctctcccaggccgcggcggcgacggcggagcgccagggcggcgagtcc
ctggagcgtacgggcctcacggactggacgatcggctcgctgacgcgcgtcttcgagaca
cgccgggcgggccagccggtgaaggcgtacccggcgctggtcgacgacggcgacaccgtc
tccgtgcggctcttcgacacggaggccgagcaggcgcaggccatgtggaagggcacgcgg
cggctgatcctgcgcaacatcccggtgaatccgggcaagttcgcctcggacaagctgacg
aacgctcagaagctcgccctgtccgcgaacccgcacggctcgatccaggcgctcttcgac
gactgcgcgatggccgccgcggacaagctgatcggggacttcgggggcccggcgtgggac
gaggagtcgtaccggaagctgtacgacaaggtgcgcgccgagatcgtcgacacgacggtt
cgtacggtggggcaggtgcagcaggtcctggccgcctggcaggcctgtgagcgccgcctg
aagggcgtacggagccctgtgctgctcgcgaacctcgcggacgtacgggcgcagctggac
gggctcgtgaagcccggcttcgtgacgaagacgggcctgcggcggctgccggacctgatg
cgctatctggtcgccgcggaccgccggctccagcagatgccgaccggcgtccagcgggac
accacccgcatggagaaggtccacgagatgcaggacgagtacgcgtggctcctggagcag
ctgccgcagggccggccgatcccttcgtcggtcctggacatccgctggatgatcgaggag
ctccgggtcagctatttcgctcacgcgctcggcacggcgtacccggtctccgacaagcgc
atcgtgaaggcgatcgacgcggcggccccgtaa
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integrated database retrieval system
