Streptomyces dengpaensis: C4B68_23645
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Entry
C4B68_23645 CDS
T06611
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdx
Streptomyces dengpaensis
Pathway
sdx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C4B68_23645 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdx03400
]
C4B68_23645 (mfd)
Enzymes [BR:
sdx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C4B68_23645 (mfd)
DNA repair and recombination proteins [BR:
sdx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C4B68_23645 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AVH58263
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All DBs
Position
5104202..5107732
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAVKAATDGNRMHVDLVGPPAARPFAVAALARETGRPVLAVTA
TGREAEDLAAALRSLLPPEGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRLDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQTADLGEIVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRQRAARLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRTRATDLVATSREFLQASWAATAGGGEAPIDVDAASLWSIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPESYRGDTARALADTKGWLADGWRTVYVTEAHGPAA
RTVEVLGGEGIAARLETDLASLSPSVVQVACGSIDYGFVDTSLKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGSDTPWQRELEDAFPYAETPDQLTTIAEVKDDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKA
VLEGLREGSVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQSLEQVVVDFWEKRYDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIEVPVDAHVPHDYAPGERLRLQAYRSIASANTEEDIKSVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIKPAVH
QVLVPRPKTAKVGGKPLIGRELLGWTGEFLASVLGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgctctcgcggaagcggtg
aaggccgccaccgacggcaaccggatgcatgtcgacctcgtcggcccgcccgcggcccgc
cccttcgcggtggcggccctggcccgcgagaccggccgccccgtcctcgcggtgacggcg
acgggccgtgaggccgaggacctggccgccgcgctgaggtccctcctcccgccggagggc
atcgtcgagtacccctcctgggagacgctcccgcacgagcggctgtccccgcgcagcgac
accgtgggccgccgcctcgccgtcctgcggcgcctggcacatccgcgcctggacgacccg
gagaccggcccggtctccgtcgtcgtcgccccggtccgctccgtactccagccgcaggtc
aagggcctgggcgacctggaaccggtggcgctgcgcacgggccagaccgccgacctgggc
gagatcgtggaggcgctcgcggcagccgcgtactcccgggtcgagctcgtcgagaagcgc
ggcgagttcgcggtccgcggcggcatcctggacgtcttcccgcccaccgaggagcacccg
ctccgcgtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctcgaggtcgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcacggacgacgtacgacagcgggcggcccggctggccgaggagcacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgccgtggagggcatggaatccctggctccg
gtcctggtcgacgacatggagctgctgctcgacgtcctgcccaagggctcgatggccgtc
gtatgcgatccggagcgggtgcggacgcgggccacggacctggtggcgacgtcgcgggag
ttcctgcaggcgtcgtgggcggcgaccgccgggggtggcgaggcccccatcgacgtggac
gccgcttccctgtggtccatcgcggatgtacgggaccgggcgcgcgagctggacatgatg
tggtggtccgtctcgccgttcgccgccgacgaggagctggacgcggacaccctcaagctg
ggcatgcacgcccccgagagctaccgtggcgacaccgccagagcgctcgccgacaccaag
ggctggctggccgacggctggcgcacggtgtacgtcaccgaggcccacggccccgcggcc
cgtacggtcgaggtgctgggcggcgagggcatcgcggcgcgcctcgaaacggatctcgcg
tccctgagcccgtccgtcgtccaggtcgcgtgcggctcgatcgactacggattcgtcgat
acgtccctgaagctggccgtcctgaccgagaccgacctctccggccagaaggcggccggc
aaggacggcgcccggatgccggcccgccgccgcaagacgatcgaccccctgacgctggag
accggcgactacatcgtgcacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcacggtccagggcgcgacccgcgagtacctggtggtggagtacgcccccgccaagcgc
ggccagcccggcgaccgcctctacatccccaccgaccaactggagcagatcaccaagtac
gtgggcggagaggccccgaccctgcaccgcctgggcggcgccgactggacgaagaccaag
gcgcgcgccaagaaggccgtcaaggagatcgcggcggacctgatcaagctgtacagcgcc
cgtatggcggcgcccggacacgccttcggctcggacaccccgtggcagcgcgagctggag
gacgcgttcccgtacgcggagacccccgatcagctgacgacgatcgccgaagtcaaggac
gacatggagaagacggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgcgcggccttcaaggcggtacaggacggcaagcaggtggccgtg
ctggtgcccacgaccctcctggtgcagcagcacttcggcacgttctccgagcgctactcg
caattcccggtgaacgtaagggccctgtcccgcttccagacggacacggaggcgaaggcg
gtcctggaggggctgcgggagggctcggtcgacctggtcatcggcacgcaccggctgttc
tcgtcggagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgcgaacgtggacgtgctgacgatg
tctgcgacacccatcccgcgcaccctggagatggcggtgaccggcatccgcgagatgtcg
acgatcaccaccccgcccgaggagcgccacccggtgctcaccttcgtcggcccgtacgag
gagaagcagatcggcgcggccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtggagtcgatcgaccgggcggcggcgcggctgcgcgagatcgtcccc
gaggcgcggatcgccaccgcccacggccagatgtcggaacagtccctggaacaggtggtc
gtcgacttctgggagaagcggtacgacgtgctggtgtcgacgacgatcgtggagtccggc
atcgacatctccaatgccaacaccctgatcgtggagcgcggcgacaacttcggcctctcg
cagctgcaccagctgcgcggccgggtcgggcgcgggcgtgagcgcggatacgcgtacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgaacgcctcgcgacgatcgcc
cagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgggga
gccggaaatctcctgggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtcggcgaggcggtcgcggactaccgcgcctcgctggagggcggtgtc
gaggaggagccgccgctggaggtcaagatcgaggtgccggtcgacgcgcacgtcccgcac
gactacgccccgggcgagcggctcaggttgcaggcctaccgttccatcgcctccgccaac
acggaggaggacatcaagtccgtacgcgaagaactcgtcgaccgttacggcaagttgccc
gaaccggtggagaacctgctcctcgtggcgggcctgcgcatgctcgcgcgcgcgtgcggc
gtcggcgagatcgtgcttcaggggaacaacatccgcttcgcgccggtggagttgcgggag
tcgcaggagctgcgcctcaagcggctgtacccggggactgtcatcaagccggccgtgcac
caggtgctggtaccgcgcccgaagaccgcgaaggtgggcgggaagcctttgatcgggcgg
gagttgctggggtggaccggggagttcttggcttcggttctggggtcttga
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integrated database retrieval system
