Shigella dysenteriae Sd197: SDY_0122
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Entry
SDY_0122 CDS
T00306
Symbol
ddlB
Name
(GenBank) D-alanine-D-alanine ligase B
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
sdy
Shigella dysenteriae Sd197
Pathway
sdy00470
D-Amino acid metabolism
sdy00550
Peptidoglycan biosynthesis
sdy01100
Metabolic pathways
sdy01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
SDY_0122 (ddlB)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SDY_0122 (ddlB)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
SDY_0122 (ddlB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
SDY_0122 (ddlB)
Enzymes [BR:
sdy01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
SDY_0122 (ddlB)
Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
Precursor biosynthesis
Amino acid ligase
SDY_0122 (ddlB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
CPSase_L_D2
ATP-grasp_4
ATP-grasp
ATPgrasp_YheCD
ATP-grasp_3
TTL
GARS_A
ATPgrasp_ST
RimK
Motif
Other DBs
NCBI-ProteinID:
ABB60357
ShiBASE_China:
SDY0122
UniProt:
Q32K00
LinkDB
All DBs
Position
122887..123807
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AA seq
306 aa
AA seq
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MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFI
ALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRA
EFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDALRLAFQHDEEVLIE
KWLSGQEFTVAILGEEILPSIRIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQAL
VLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR
ILELAD
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgactgataaaatcgcggtcctgttgggtgggacctccgctgagcgggaagtttctttg
aattctggcgcagcggtgttagccgggctgcgtgaaggcggtattgacgcatatcctgtc
gacccgaaagaagtcgacgtgacgcaactgaagtcgatgggctttcagaaagtgtttatc
gcgctacacggccgcggcggtgaagatggtacgctgcagggcatgctcgagctgatgggc
ttgccttataccggaagcggagtgatggcatctgcgctttcaatggataaactacgcagc
aaacttctatggcaaggtgccggtttaccggtcgtgccgtgggtagcgttaacccgcgca
gagtttgaaaaaggtctgagcgataagcagttagcagaaatttctgctctgggtttgccg
gttatcgttaagccgagccgcgaaggttccagtgtgggaatgtcaaaagtagtagcagaa
aatgctctacaagatgcattaagattggcatttcagcacgatgaagaagtattgattgaa
aaatggctaagtgggcaggagttcacggttgcgatactcggtgaagaaattttaccgtca
atacgtattcaaccgtccggaaccttctatgattatgaggcgaagtatctctctgatgag
acacagtatttctgccctgcaggtctggaagcgtcacaagaggccaatttgcaggcatta
gtgctgaaagcatggacgacgttaggttgcaaaggatggggacgtattgacgttatgctg
gacagcgatggacagttttatctgctggaagccaatacctcaccgggtatgaccagccac
agcctggtgccgatggcggcacgtcaggcaggtatgagcttctcgcagttggtagtacga
attctggaactggcggactaa
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