Shigella dysenteriae Sd197: SDY_1986
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Entry
SDY_1986 CDS
T00306
Symbol
yebU
Name
(GenBank) putative nucleolar proteins
KO
K11392
16S rRNA (cytosine1407-C5)-methyltransferase [EC:
2.1.1.178
]
Organism
sdy
Shigella dysenteriae Sd197
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdy03009
]
SDY_1986 (yebU)
Enzymes [BR:
sdy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.178 16S rRNA (cytosine1407-C5)-methyltransferase
SDY_1986 (yebU)
Ribosome biogenesis [BR:
sdy03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
SDY_1986 (yebU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Methyltr_RsmB-F
YebU_pre-PUA_dom
Methyltr_RsmF_N
Methyltranf_PUA
Methyltransf_31
PCMT
Methyltransf_25
TRM
TruB-C_2
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
ABB62086
ShiBASE_China:
SDY1986
UniProt:
Q32F19
LinkDB
All DBs
Position
1805476..1806921
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AA seq
481 aa
AA seq
DB search
MLVAQHTVYFPDAFLTQMREAMPSTPSFDDFLAACQRPLRRSIRVNTLKISVADFLRLTA
PYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAP
QRVMDIAAAPGSKTTQIAARMNNEGTILANEFSASRVKVLHANISRCGISNVALTHFDGR
VFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRL
GGTLVYSTCTLNREENEAVCLWLKETYPDAVEFLPLGDLFPGTNKALTEEGFLHVFPQIY
DCEGFFVARLRKTQAIPALPTPKYKVGNFPFSPVKDREAGQIRQAAASVGLNWDENLRPW
QRDKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIALASPDNENAFELTP
QEAEEWYRGRDVYPQAAPVADDVLVTFQHQPIGLAKRIGSRLKNSYPRELVRDGKLFTSN
A
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtggcccaacacaccgtttatttcccggacgcctttctgacgcaaatgcgcgaa
gcaatgccttcgacgccctcttttgatgattttcttgccgcctgtcagcgcccattgcgc
cgcagcattcgcgttaatacgctgaaaatctccgttgctgatttcctgcgattaaccgct
ccttatggctggacgcttacgccaattccgtggtgtgaagaaggtttctggattgaacgc
gacaatgaagatgcattgccattgggtagtaccgccgagcatttaagtggcctgttttat
attcaggaagccagttcaatgttgcccgtcgccgccttgtttgctgacggtaatgcacca
cagcgggtgatggatatcgctgctgcgccaggctccaaaacgacgcaaattgccgcgcgg
atgaataacgaagggacaatccttgccaatgagttttccgccagtcgggtaaaagtgtta
catgccaatatcagccgctgtggcatcagtaatgttgcgctcacacattttgatggccgc
gtgtttggtgcggcagtgccagaaatgttcgatgccattttgctggacgctccctgctct
ggcgaaggcgtggtgcgtaaagatcccgatgcgctaaaaaactggtcaccagaaagcaat
caggaaatcgcagctacacaacgggagcttatcgacagcgcctttcatgcattacgtctt
ggtggtacgctggtttactcgacctgtaccttaaacagggaagaaaacgaagccgtttgc
ctgtggctgaaagagacttaccctgacgcagtagagtttttaccgcttggcgatctcttc
cctgggacaaacaaagcgctgaccgaagaaggctttttgcatgttttcccacaaatttac
gactgcgaaggcttcttcgttgctcgtctgcgtaaaactcaggccattcccgccttaccc
accccaaaatacaaagtgggcaatttcccgttcagcccggtgaaagatcgcgaagccgga
caaattcgtcaggcggctgcaagtgttggcttaaactgggatgaaaacctgcgcccctgg
cagcgtgacaaagaactgtggttgttcccggtgggcattgaagccctgatcggtaaagtc
cgattttctcgcctggggattaaacttgccgagacgcataacaaaggttatcgctggcag
catgaagcggttattgcccttgcctcccccgacaacgagaacgcttttgaactgacaccg
caagaagcggaggagtggtatcgcgggcgcgatgtttacccgcaagccgcgccagtggcg
gatgacgtgttggttactttccagcatcagccgattggtttagccaaacggattggttcg
cgactgaaaaacagctacccgcgtgaactggtgcgggacgggaaactttttaccagtaac
gcatga
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