Shigella dysenteriae Sd197: SDY_2051
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Entry
SDY_2051 CDS
T00306
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
sdy
Shigella dysenteriae Sd197
Pathway
sdy03030
DNA replication
sdy03430
Mismatch repair
sdy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SDY_2051 (holB)
03430 Mismatch repair
SDY_2051 (holB)
03440 Homologous recombination
SDY_2051 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdy03032
]
SDY_2051 (holB)
03400 DNA repair and recombination proteins [BR:
sdy03400
]
SDY_2051 (holB)
Enzymes [BR:
sdy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SDY_2051 (holB)
DNA replication proteins [BR:
sdy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SDY_2051 (holB)
DNA repair and recombination proteins [BR:
sdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SDY_2051 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNApol3-delta_C
DNA_pol3_delta2
HolB_lid
EPF
Motif
Other DBs
NCBI-ProteinID:
ABB62146
ShiBASE_China:
SDY2051
UniProt:
Q32EV9
LinkDB
All DBs
Position
complement(1863225..1864229)
Genome browser
AA seq
334 aa
AA seq
DB search
MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCG
HCRGCQLMQAGTHPDYYTLAPEKGKSTLGIDAVREVTEKLNEHARLGGAKVVWVTDAALL
TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVAWLSREV
TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ
APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQL
MSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgagatggtatccatggttacgacctgatttcgaaaaactggtagccagctatcaggcc
ggaagaggtcaccatgcgctactcattcaggcgttaccgggcatgggcgatgatgcttta
atctacgccctgagccgttatttactctgccaacaaccgcagggccacaaaagttgcggt
cactgtcgtggatgtcagttgatgcaggctggcacgcatcccgattactacaccctggct
cccgaaaaagggaaaagtacgctgggcattgatgcggtacgtgaggtcaccgaaaagctg
aatgagcacgcacgcttaggtggtgcgaaagttgtctgggtaaccgatgctgccttactg
accgacgccgcggccaacgcattgctgaaaacgcttgaagagccaccagcagaaacctgg
tttttcctggctacccgcgagcctgaacgtttactggcaacattacgtagtcgttgtcgg
ttacattaccttgcgccgccgccggaacagtacgccgtggcctggctttcacgcgaagtg
acaatgtcacaggatgcattacttgccgcattgcgcttaagcgccggttcgcctggcgcg
gcactggcgttgtttcagggagataactggcaggctcgtgaaacattgtgtcaggcgttg
gcatatagcgtgccatcgggcgactggtattcgctgctagcggcccttaatcatgaacaa
gctccggcgcgtttacactggctggcaacgttgctgatggatgcgctaaaacgccatcat
ggcgctgcgcaggtgaccaatgttgatgtgccgggcctggtcgccgaactggcaaaccat
ctttctccctcgcgcctgcaggctatactgggggatgtttgccacattcgtgaacagtta
atgtctgtcacaggcatcaaccgcgagcttctcatcaccgatcttttactgcgtattgag
cattacctgcaaccgggcgttgtgctaccggttcctcatctttaa
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