Shigella dysenteriae Sd197: SDY_2233
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Entry
SDY_2233 CDS
T00306
Symbol
dacD
Name
(GenBank) penicillin binding protein 6b
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
sdy
Shigella dysenteriae Sd197
Pathway
sdy00550
Peptidoglycan biosynthesis
sdy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SDY_2233 (dacD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sdy01002
]
SDY_2233 (dacD)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
SDY_2233 (dacD)
Enzymes [BR:
sdy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SDY_2233 (dacD)
Peptidases and inhibitors [BR:
sdy01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
SDY_2233 (dacD)
Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
SDY_2233 (dacD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
Beta-lactamase
Motif
Other DBs
NCBI-ProteinID:
ABB62317
ShiBASE_China:
SDY2233
UniProt:
Q32ED8
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All DBs
Position
2035938..2037074
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AA seq
378 aa
AA seq
DB search
MFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDYTTGQILTSGNEHQQRNPASLTKLMTG
YVVDRAIDSHRITPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSVRDLSRGLIVDSG
NDACVALADYIAGGQRQFVEMMNNYVEKLHLKDTHFETVHGLDAPGQHSSAYDLAVLSRA
IIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMNIDGLKTGHTSGAGFNLMASAVDG
QRRLIAVVMGADSAKGREEEARKLLRWGQQNFTTVQILHRGKKVGTERIWYGDKENIALG
TEQEFWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLES
VGEGSMFSRLSDYFHHKA
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgtttttaacttatcgtctggttttgcggcggaaaacattcctttttcacctcag
cctccagagattcatgccgggtcctgggtactgatggattacaccaccggacagatcctc
acttcgggtaatgagcatcaacagcgcaatcccgccagcctgacaaagctgatgacgggt
tatgtcgtggatcgcgctatcgatagtcatcgcattacgccagacgatattgtcaccgtg
gggcgcgatgcgtgggcgaaagataatccggtgtttgtcggttcttcactgatgtttttg
aaagagggcgatcgcgtatcggtacgtgatttaagccgtggtttaattgtggattccgga
aatgacgcttgtgttgcactggctgactatattgccggtgggcaacggcagtttgttgaa
atgatgaacaactatgtcgagaagctgcatctcaaggatacgcattttgaaacagtgcat
ggcctggatgcgccaggtcagcatagctcggcttatgatttagctgtgctttctcgcgct
atcatccacggcgagcccgagttttatcatatgtacagtgagaaaagcctcacctggaat
ggtatcacccagcaaaaccgtaacgggttattgtgggataaaaccatgaatattgacggc
ctgaaaacgggtcatacttctggtgccgggtttaatctcatggcttcggctgtagatggg
cagcgtcgtctcattgcagtggtaatgggtgctgacagcgcaaaaggtcgtgaggaagag
gcaagaaaattactgcgttgggggcaacaaaactttactacggtgcaaattttgcaccgt
gggaaaaaggtcggtacggaacgcatctggtatggcgataaagaaaatatcgccctggga
acagaacaagagttctggatggtactaccgaaagccgaaattccacatatcaaagccaaa
tatacccttgatggtaaagagctcaccgcgccaattagcgcccatcagcgggtaggggaa
attgaactttacgaccgtgataaacaggtggcgcactggccgctggttaccctggaatct
gtcggggaaggcagcatgttttctcgcctgagtgattatttccaccataaggcttga
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