Shigella dysenteriae Sd197: SDY_2332
Help
Entry
SDY_2332 CDS
T00306
Symbol
ycbB
Name
(GenBank) putative amidase
KO
K21470
L,D-transpeptidase YcbB
Organism
sdy
Shigella dysenteriae Sd197
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sdy01002
]
SDY_2332 (ycbB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
SDY_2332 (ycbB)
Peptidases and inhibitors [BR:
sdy01002
]
Cysteine peptidases
Family C82
SDY_2332 (ycbB)
Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
SDY_2332 (ycbB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
DUF4389
Motif
Other DBs
NCBI-ProteinID:
ABB62409
ShiBASE_China:
SDY2332
UniProt:
Q32E46
LinkDB
All DBs
Position
complement(2119596..2121443)
Genome browser
AA seq
615 aa
AA seq
DB search
MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIM
AGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQL
AEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTHWLYSSKP
YALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLSDTKPWPQLTGK
ATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMD
KQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLA
LNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVV
VNPPWKVPPTLARKDILPKVRNDPGYLEIHGYTVMRGWNSREAIDPWQVDWSTITASNLP
FRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANM
LLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPA
RSSSQIVSKAEQLIR
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttaatatgatgtgtggtcgtcggctgtcggcaatcagtttgtgcctggccgta
acattcgctccactgttcaatgcgcaggccgatgagcctgaagtaatccctggcgacagc
ccggtggctgtcagtgaacagggcgaggcactgccgcaggcgcaagccacggcaataatg
gcggggatccagccattgcctgaaggtgcggcagaaaaagcccgcacgcaaatcgaatct
caattacccgcaggttacaagccggtttatcttaaccagcttcaactgttgtatgccgca
cgcgatatgcaacccatgtgggaaaaccgtgatgctgttaaagccttccagcaacagctg
gcagaggtggcgattgctggtttccagccgcagtttaataaatgggtagagttactgacc
gatcctggtgttaacgggatggcacgtgacgtggtgctctctgatgcgatgatgggctat
ctccatttcattgcaaatattccggtcaaaggcactcactggctatatagcagtaaacct
tatgcgctttcaacgccgccgctttcggtgattaaccaatggcagctagcgctggataaa
ggtcaattgcctacgtttgttgcaggactggcaccgcagcatccgcaatatgcggcgatg
catgaatcgttactggccttactcagtgacaccaaaccgtggccccaactgaccggcaaa
gcaacgttgcgcccagggcagtggagtaacgacgtaccggcgttgcgcgaaatattgcaa
cgcacaggcatgttggacggggggccgaaaattactctacctggcgatgacacgccaact
gacgcggtagtcagcccatccgctgttactgttgaaacagcagaaactaagccgatggac
aagcaaacgacgtctcgtagtaaacctgcgcctgccgttcgtgccgcctacgataatgaa
ctggtggaagccgttaaacgttttcaggcatggcaaggattgggggcagatggtgctatt
ggcccggcaacgcgggactggttaaacgtaacgcccgcccagcgtgctggcgtgttggca
ctcaacatccagcgattgcgcttgctgccaacagagctttctaccgggatcatggttaac
atcccggcctattcgctggtctactatcagaacggcaatcaggtgctggattcgcgagtc
attgtcggtcgccccgatcgcaaaacgccgatgatgagcagtgcacttaacaacgtagtg
gtaaacccgccgtggaaggtacctccaactctggcacgcaaagatattctgccaaaagtg
cgcaacgatccgggatatctcgaaatccatggctatacggtgatgcgcggctggaacagc
agagaagcgattgacccatggcaggttgactggtctacaatcacggcctcgaatttaccg
ttccgcttccagcaggctccaggcccacggaactcgctggggcgctataaattcaatatg
ccgagttcagaggccatttatttgcatgacacgccgaaccacaatctgttcaagcgtgat
acacgcgcattgagctcaggctgtgtacgagtgaataaagcttccgatctggcgaatatg
ctgttgcaggatgcaggctggaatgacaaacgtatttctgatgcgctgaagcagggtgat
acacgttacgtcaatattcggcagtcgattccggtgaatctctactacctgacggccttt
gttggtgcagatggtcgtacccagtatcgtacagatatttacaattatgatctgcctgcg
cgatccagctcgcaaatcgtatcgaaagcggaacaattaatcaggtaa
DBGET
integrated database retrieval system
