Shigella dysenteriae Sd197: SDY_2460
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Entry
SDY_2460 CDS
T00306
Symbol
menD
Name
(GenBank) 2-oxoglutarate decarboxylase
KO
K02551
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase [EC:
2.2.1.9
]
Organism
sdy
Shigella dysenteriae Sd197
Pathway
sdy00130
Ubiquinone and other terpenoid-quinone biosynthesis
sdy01100
Metabolic pathways
sdy01110
Biosynthesis of secondary metabolites
sdy01240
Biosynthesis of cofactors
Module
sdy_M00116
Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00130 Ubiquinone and other terpenoid-quinone biosynthesis
SDY_2460 (menD)
Enzymes [BR:
sdy01000
]
2. Transferases
2.2 Transferring aldehyde or ketonic groups
2.2.1 Transketolases and transaldolases
2.2.1.9 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase
SDY_2460 (menD)
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Motif
Pfam:
TPP_enzyme_M_2
TPP_enzyme_N
TPP_enzyme_C
Motif
Other DBs
NCBI-ProteinID:
ABB62531
ShiBASE_China:
SDY2460
UniProt:
Q32DS4
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Position
complement(2260533..2262203)
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AA seq
556 aa
AA seq
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MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAENSAFIHHTHFDERGLGH
LALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTADRPPELIDCGVNQAI
RQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDD
TGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRMSAEEGKKAALW
AQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLQQWQAS
CEPVEYWIVDDIEGRLDPAHHRGRRLIANIADWLELHPAEKCQPWCVEIPRLAEQAMQAV
IARRDAFGEAQLAHRVCDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDG
LLSTAAGVQRASGKPTLAIVGDLSALYDLNALALLRQVSAPLVLIVVNNNGGQIFSLLPT
PKSERECFYLMPQNVHFEHAAAMFELKYHRPQNWQELETVLADAWRTPTTTVIEMVVNDT
DGAQTLQQLLAQVSHL
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtaagcgcatttaaccgacgctgggcggcggtcattttggaagcattaacgcgt
cacggcgtcagacacatctgtatcgcccctggctcgcgttctacaccgttaacgttagcg
gcggcggagaattccgcattcattcaccacacccatttcgatgagcgtggactggggcat
ctggcgctggggctggcgaaagtcagcaagcagccggtggcggtgattgtcacctccggt
acggcggtggcaaatctctatccggcactgattgaagctgggttaaccggagaaaaactg
atcctgttaaccgccgatcgcccgccggagctaattgactgcggcgtgaatcaggcgatt
cgtcagccgggaatgttcgcctctcaccccacgcacagtatttcactgccgcgcccgacc
caggatatccccgcacgttggctggtttctaccatcgaccatgctctcggtacgcttcat
gctggtggagtccatatcaactgcccgtttgccgaaccgctgtatggcgaaatggacgac
actgggcttagctggcaacagcgtctgggtgactggtggcaggatgataagccgtggctg
cgtgaagcgcctcgtctggaaagtgaaaaacagcgcgactggttcttctggcggcaaaaa
cgcggcgtggtggttgccgggcgcatgagtgcggaagagggcaaaaaagctgcactgtgg
gcgcaaactcttggctggccgctgattggcgacgtgctgtcgcaaaccggacagccgctg
ccgtgtgccgatctttggttaggcaatgccaaagcgaccagcgaactgcaacaggcgcaa
attgtggtgcaactgggaagcagcctgacgggcaaacggctccagcaatggcaggcaagc
tgtgaacccgtagagtactggattgtggatgacatcgaagggcggcttgatccggcgcac
catcgcgggcgtcggttaattgccaatattgccgactggctggaactgcatccggcagaa
aaatgccagccctggtgcgttgaaatcccgcgcctggcggagcaggcgatgcaggcggtt
attgcccgtcgcgatgcgtttggcgaagcgcaactggcgcatcgcgtctgcgactatctg
cctgaacaggggcaattgtttgtcggtaacagcctggtggtacgtctgattgatgcgctt
tcgcaacttccggcaggttacccggtgtacagcaaccgtggggccagcggtatcgacggg
ctgctctcgactgccgccggcgttcagcgggcaagcggcaaaccgacgctggcgattgtg
ggcgatctctccgcactttacgacctgaatgcgctggcgttattgcgccaggtttccgcg
ccgctggtattaattgtggtgaacaacaacggcgggcaaattttctcgctgctgccaacg
ccgaaaagcgagcgcgagtgtttttatctgatgccgcaaaacgtccattttgagcacgct
gccgcgatgtttgagctgaaatatcatcgtccgcaaaactggcaggaacttgaaacggta
cttgccgacgcctggcgtactccgaccaccacggtaattgaaatggtggttaacgacacc
gacggcgcgcaaacgctccagcaactgctggcgcaggtaagccatttatga
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