Shigella dysenteriae Sd197: SDY_3002
Help
Entry
SDY_3002 CDS
T00306
Symbol
ygcA
Name
(GenBank) putative enzyme
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sdy
Shigella dysenteriae Sd197
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdy03009
]
SDY_3002 (ygcA)
Enzymes [BR:
sdy01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SDY_3002 (ygcA)
Ribosome biogenesis [BR:
sdy03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SDY_3002 (ygcA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
TRM5-TYW2_MTfase
PCMT
RrnaAD
Methyltransf_11
MTS
Methyltransf_15
Cons_hypoth95
Methyltransf_ANTKMT
Methyltr_RsmB-F
Methyltransf_23
Methyltransf_4
FtsJ
Ubie_methyltran
PrmA
Methyltrans_SAM
CMAS
Motif
Other DBs
NCBI-ProteinID:
ABB63025
ShiBASE_China:
SDY3002
UniProt:
Q32CD0
LinkDB
All DBs
Position
complement(2769674..2770975)
Genome browser
AA seq
433 aa
AA seq
DB search
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLSQENAEVTVTEDKKQ
YARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVI
ADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACL
GSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEIFE
TVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNF
TLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV
LLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHT
GHLESMVLFSRVK
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctactctgcaaaacgacgcacgacgacgcgtcagatcataaccgtttca
gtcaacgacctcgactcttttggtcagggcgtggcgcgacataacggcaaaacgctattt
atccccggattattgtcgcaggagaacgcggaagttactgttactgaagataaaaaacag
tatgcccgcgctaaagtagtacgccggttaagcgatagcccggaacgcgaaacgccacgc
tgtcctcattttggcgtatgcggcggctgtcagcaacaacacgccagcgtggatttacag
cagcgaagcaaaagtgcggcactcgcccgattaatgaaacacgaagtctctgaagtgatc
gccgatgttccctggggctatcgccgtcgcgcgcgtttaagtctgaactacttaccgaaa
acacagcaacttcagatggggtttcgcaaagcgggctccagtgacattgtcgacgttaaa
caatgtcccattttagtgccccaacttgaagcattgctgcccaaagtcagggcatgcttg
ggcagcttacaagctatgcgccatcttggtcatgttgaactggtacaggcaaccagcggc
acgctgatgattttgcgccataccgcaccgctaagttcggcagatcgcgaaaaactggaa
cgcttttcgcattctgaaggcctggatctgtatctcgcccccgatagtgagatattcgaa
accgtctctggtgagatgccctggtatgactcaaacgggttgcgcttaacttttagcccg
cgcgattttattcaggtcaatgcgggtgtgaaccaaaaaatggtagcgcgtgcgttggaa
tggctggatgtgcaacctgaagatcgcgtactggatctgttctgcggtatgggcaacttt
acactgccattggcgacacaagctgccagtgtggtcggtgtagaaggtgttccggcgctg
gtggaaaaaggccagcagaatgcgcgtcttaatggcttacagaatgtgacgttttatcac
gaaaatcttgaagaagatgtcacaaagcagccgtgggcgaaaaacggcttcgataaagtg
ttgctggacccggcgcgagcaggtgccgcaggtgttatgcagcaaattataaaactggaa
cctattcgtatagtttatgtatcctgtaaccctgcaacgctggctcgggatagcgaagcg
ttattaaaagcaggatataccattgcgcgactggcgatgctggatatgttcccacacacg
ggacatctggaatcgatggtacttttctcgcgcgttaaatag
DBGET
integrated database retrieval system
