Shigella dysenteriae Sd197: SDY_3363
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Entry
SDY_3363 CDS
T00306
Symbol
dacB
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase, fraction B
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
sdy
Shigella dysenteriae Sd197
Pathway
sdy00550
Peptidoglycan biosynthesis
sdy01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
SDY_3363 (dacB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sdy01002
]
SDY_3363 (dacB)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
SDY_3363 (dacB)
Enzymes [BR:
sdy01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
SDY_3363 (dacB)
Peptidases and inhibitors [BR:
sdy01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
SDY_3363 (dacB)
Peptidoglycan biosynthesis and degradation proteins [BR:
sdy01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
SDY_3363 (dacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
Beta-lactamase2
Transpeptidase
Motif
Other DBs
NCBI-ProteinID:
ABB63354
ShiBASE_China:
SDY3363
UniProt:
Q32BF1
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All DBs
Position
3120368..3121801
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AA seq
477 aa
AA seq
DB search
MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVGASAPAIDYHSQQMALP
ASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLVARFGADPTLKRQDIRNMV
ATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCFSAPPAAAIVDRNCLSVSLYS
APKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCELDVVPGDLNRFTLTGCLPQRSE
PLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLRQTQVNEPGTVVASKQSAPLHDLLK
IMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSDAVRQILRQQAGVDIGNTIIADGSGLS
RHNLIAPATMMQVLQYIAQHDNELNFISMLPLAGYDGSLQYRAGLHQAGVDGKVSAKTGS
LQGVYNLAGFITTASGQRMAFVQYLSGYAVEPADQRNRRIPLVRFESRLYKDIYQNN
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgattttccagatttatcatcggattgaccagctgtatagcgttcagtgttcaggcc
gcgaatgttgatgagtacgttactcaactccccgctggtgccaaccttgccctgatggtg
caaaaagtcggcgcgtcggcccccgctattgattaccacagtcagcagatggcgctgccc
gccagtacccagaaagtgattactgcgctggcggcgttgattcaactcggccccgatttt
cgtttcaccacgacgcttgaaaccaaaggcaatgtggaaaacggcgtacttaagggtgac
ttagtggcgcgatttggtgccgatccgacgttaaaacgtcaggatattcgcaatatggtc
gcgactttgaaaaaatctggcgtcaaccaaatcgatggcaatgtgttgatagatacctcc
attttcgccagccacgataaagcccccggctggccatggaatgacatgacacaatgcttt
agcgctccgcctgccgccgccatagttgaccgcaactgtttatccgtctcgctctacagt
gccccaaaacctggtgatatggcttttatacgcgtggcatcttattaccccgttacgatg
ttcagccaggtacgcaccctcccccgtggttctgccgaagcgcaatactgcgaactggat
gtcgtgccaggcgacctgaaccgctttacgctaacgggatgcctgccgcaacgttctgag
ccgctcccgttggcttttgccgtgcaggatggagccagctatgccggggcaattctgaaa
gatgagttaaaacaggcaggtatcacctggagcggaacactgctgcgccagactcaggtt
aacgaacctggaacggtagttgccagtaaacagtcggccccgttgcacgatctgcttaag
attatgctgaaaaagtcggacaacatgatcgccgatacggttttccgcatgataggccat
gcgcgcttcaatgtgcctggaacatggcgggccgggtcggacgccgtgcgtcagatcctg
cgccagcaagccggtgtcgatattggaaataccattattgccgatggttcagggctttcg
cggcataacctgattgcccccgccaccatgatgcaggtgctgcaatacattgcccaacac
gacaatgaacttaactttatctccatgctgccgctggcgggctatgacggctctttgcag
taccgtgcaggtctgcatcaggcgggcgtggatggcaaagtctcagcgaaaaccggttcg
ttgcagggggtatataacctggcgggattcattaccacagcgagcgggcaacgaatggcg
tttgtacaatatctttctggctatgcagtagaaccggcggatcagcgtaatcgccgtatt
ccgttagtgcgttttgaaagccgtttgtataaagatatttatcagaacaattag
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