Shigella dysenteriae Sd197: SDY_3932
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Entry
SDY_3932 CDS
T00306
Symbol
uvrD
Name
(GenBank) DNA-dependent ATPase I and helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sdy
Shigella dysenteriae Sd197
Pathway
sdy03420
Nucleotide excision repair
sdy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SDY_3932 (uvrD)
03430 Mismatch repair
SDY_3932 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdy03400
]
SDY_3932 (uvrD)
Enzymes [BR:
sdy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SDY_3932 (uvrD)
DNA repair and recombination proteins [BR:
sdy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SDY_3932 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SDY_3932 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ABB63866
ShiBASE_China:
SDY3932
UniProt:
Q329Y9
LinkDB
All DBs
Position
complement(3662317..3664479)
Genome browser
AA seq
720 aa
AA seq
DB search
MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAV
TFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQL
RLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQSYGNPVEQTWQKVYQAYQEA
CDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNILVDEFQDTNNIQYAWIRLLAGDT
GKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAETIRLEQNYRSTSNILSAANALIENN
NGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGGALAECAILYRSNAQS
RVLEEALLQASMPYRIYGGMRFFERQEIKDALSYLRLIANRNDDAAFERVVNTPTRGIGD
RTLDVVRQTSRDRQLTLWQACRELLQEKALAGRAASALQRFMELIDALAQETADMPLHVQ
TDRVIKDSGLRTMYEQEKGEKGQTRIENLEELVTATRQFSYNEEDEDLMPLQAFLSHAAL
EAGEGQADTCQDAVQLMTLHSAKGLEFPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAY
VGVTRAMQKLTLTYAETRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMG
TPMVENDSGYKLGQRVRHAKFGEGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atggacgtttcttacctgctcgacagccttaatgacaaacagcgcgaagcggtggccgcg
ccacgcagcaaccttctggtgctggcgggcgcgggcagtggtaagacgcgcgtactggtg
catcgtatcgcctggctgatgagcgtggaaaactgctcgccatactcgattatggcggtg
acgtttaccaacaaagcggcggcggagatgcgtcatcgtatcgggcaactgatgggcacc
agccagggcggtatgtgggtcggcaccttccacgggctggcgcaccgtttgctgcgtgcg
caccatatggacgccaatctgccgcaggatttccagatcctcgatagcgaagaccagcta
cgcctgcttaagcgtctgatcaaagccatgaaccttgacgagaagcagtggccgccgcgc
caggcaatgtggtacatcaacagccagaaagatgaaggcttacgtccgcatcatattcaa
agctacggtaatccggtggagcagacctggcagaaagtgtatcaggcgtatcaggaagcg
tgcgaccgtgcgggcctggtggacttcgccgagctgctgctgcgtgctcacgagttgtgg
cttaacaagccgcatatcctgcaacactaccgcgaacgttttactaacatcctggtggac
gaattccaggataccaacaacattcagtacgcgtggatccgcctgctggcgggcgacacc
ggcaaagtgatgatcgtcggtgatgacgaccagtcaatctacggctggcgcggggcgcag
gtggagaatattcagcgtttcctcaatgatttccccggtgccgaaactatccgtctggag
cagaactatcgttctaccagtaacattctgagcgccgcgaacgccctgattgaaaacaac
aacgggcgtctgggtaaaaaactgtggaccgatggcgcggacggtgagcctatttccctc
tattgcgcttttaacgaactcgatgaagcgcgttttgtcgttaaccgcatcaaaacctgg
caggacaacggtggggcgctcgccgagtgcgccattctctaccgcagcaacgcccagtcg
cgtgtactggaagaagcactgttgcaggcaagtatgccgtaccgtatttacggcgggatg
cgattcttcgaacgccaggaaatcaaagatgcgctctcatatctgcgcctgattgccaac
cgcaacgacgacgcggcctttgagcgtgtggtgaatacgccaacgcggggtattggtgac
cggacgctggacgtggtacgtcagacatcgcgcgatcgccagttaacactctggcaggca
tgtcgtgagctgttgcaggaaaaagcgctcgccgggcgagctgccagcgccttgcagcga
tttatggaattaatcgacgccttagcgcaagaaactgccgatatgccgctgcatgtacag
actgaccgggtaattaaagactccggcctgcgcaccatgtacgagcaggagaagggcgaa
aaaggccagacgcgtatcgaaaacttagaggaactggtgacggcaacgcgccagttcagc
tacaacgaagaagatgaagatttaatgccgctgcaggcgttcctctcccatgcggcactg
gaagcgggcgaggggcaggcggatacctgtcaggacgcggtgcagttgatgacgctacac
tcggcgaaagggctggagttcccgcaggtgtttatcgtcggtatggaagagggcatgttc
ccaagccagatgtcgctggatgaaggcggtcgtctggaagaagaacgccgtctggcctac
gttggcgtaacccgtgcgatgcagaaactgacgctgacctacgcggaaactcgccgtctg
tatggcaaagaggtttaccatcgcccgtcgcgctttatcggtgagttgccggaagagtgt
gtggaagaggtgcgcctgcgtgccacggtaagccgcccggtcagccatcagcgtatgggt
acgccgatggtcgagaacgacagcggctacaagctcggccagcgtgtacgccacgctaag
tttggtgaaggcactatcgtcaatatggaaggcagcggcgagcatagccgtttgcaggtg
gcattccagggccagggaatcaaatggctggtggcggcttacgcccggctggagacggtg
taa
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