KEGG T00306: SDY

Shigella dysenteriae Sd197: SDY_3969

Entry

SDY_3969          CDS       T00306

Symbol

rhlB

Name

(GenBank) putative ATP-dependent RNA helicase

K03732

ATP-dependent RNA helicase RhlB [EC:5.6.2.7]

Organism

sdy Shigella dysenteriae Sd197

Pathway

sdy03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:sdy00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SDY_3969 (rhlB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sdy03019]
    SDY_3969 (rhlB)
Enzymes [BR:sdy01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     SDY_3969 (rhlB)
Messenger RNA biogenesis [BR:sdy03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     SDY_3969 (rhlB)

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII ERCC3_RAD25_C CCDC138_C AAA_22

Other DBs

NCBI-ProteinID:

ABB63897

ShiBASE_China:

SDY3969

UniProt:

Q329V8

LinkDB

Position

3697522..3698787

AA seq 421 aa
MSKTHLTEQKFSDFSLHPKVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSMFHYLLSHPAIADRKVNKPRALIMAPTRELAVQIHADAEPLAEATGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYIEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPDALMTDLPKPLRLTRPRTGNGPRRTGAPRNRRRS
G

NT seq 1266 nt +upstreamnt +downstreamnt
atgagcaaaacacatttaacagaacagaagttttccgacttctccctgcatccgaaggtt
gtagaagcccttgaaaaaaaagggtttcataactgtacgcccattcaggcactggccctt
ccgctgacgctggcgggtcgtgacgtagccgggcaggcgcaaaccggtaccgggaaaacg
atggcgtttcttacgtcaatgtttcattatcttctctctcatcctgcgattgccgatcgc
aaggtgaataaaccgcgtgccttaattatggcaccgacgcgtgaacttgccgtgcagatc
catgccgacgcagaaccgctggcggaagctactggcctgaagctgggtctggcttacggt
ggtgatggctacgacaaacagctgaaagtgctggaaagcggcgttgacattctgattggc
accacgggtcgtttaattgactacgccaagcagaaccacattaacctcggtgccattcag
gtagtggtactggacgaagccgatcgcatgtacgatctgggctttattaaagatatccgc
tggctgttccgccgtatgccgcctgcaaaccagcgcctcaacatgctgttctccgccacg
ctttcgtaccgggtacgtgaactggcgttcgagcagatgaacaatgccgaatatattgaa
gtggaaccggaacagaaaacgggccaccgtattaaagaagagcttttctacccttctaac
gaagaaaaaatgcgtttgctgcaaacgctgatcgaagaagagtggccagacagagcgatt
attttcgccaataccaaacaccgttgtgaagagatctggggccacctggcggcagatggt
catcgtgtcggtttgttgacaggcgatgtcgcgcagaaaaaacgtctgcgtattcttgat
gaatttacccgtggcgatctggatattctggttgccaccgacgttgccgcgcgtggtttg
catattccggcagtgacgcacgtctttaactacgatttacccgatgactgtgaagattac
gttcaccgtattggtcgtacaggtcgcgcaggcgcaagcggtcactctatcagcctggcg
tgtgaagagtatgcattgaatttgcctgctattgaaacctatattggtcactcaattccg
gtaagcaaatacaatccggacgcattgatgaccgatctgccaaaaccgctgcgcctcacg
cgcccacgtacaggcaatggtccgcgtcgtactggcgctccgcgtaatcgtcgtcgttca
ggttaa

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