Symmachiella dynata: Mal52_11010
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Entry
Mal52_11010 CDS
T06944
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdyn
Symmachiella dynata
Pathway
sdyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mal52_11010 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdyn03019
]
Mal52_11010 (cshA)
03009 Ribosome biogenesis [BR:
sdyn03009
]
Mal52_11010 (cshA)
Enzymes [BR:
sdyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mal52_11010 (cshA)
Messenger RNA biogenesis [BR:
sdyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mal52_11010 (cshA)
Ribosome biogenesis [BR:
sdyn03009
]
Prokaryotic type
rRNA helicases
Mal52_11010 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
ResIII
Helicase_C_2
SWI2_SNF2
UvrD-helicase
NYN_YacP
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDU42634
UniProt:
A0A517ZJI8
LinkDB
All DBs
Position
complement(1387686..1388954)
Genome browser
AA seq
422 aa
AA seq
DB search
MSNETEKPTKGFADFGLSETTLKALKKVNYETPSPIQAAFIPIAVTGKDCMGQAQTGTGK
TASFVLPSLQAIDDRIPATQVLVLTPTRELSDQVNAEAQRLCHGTKCRTTSCVGGKDIRK
QISDLKRGAQIAVGTPGRVLDLISRGVLDLSTLKIVILDEADRMLDIGFRPDIEKILRSC
PAKRQTLLLSATMPPPVERLARRFMNEPERVDLSTKGIAATTVEQFCVTVDRNRKYELLT
RVLFQEKPRQAIVFTRTKRGADALLKRLSRKLTKQIAVIHGDLQQRQRDRVLNGFREGNI
RLLIATDVMGRGIDVSGVSHIINYDIPEFCDDYVHRIGRTGRMNGELGRGFTFVTPEEGE
QLTNIEIRINGLLEPYTVPNFDAFEPRKPYDPEKAAEEREKAPPAPTRNGRFRRTALAAR
VV
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
ttgtccaacgaaacggagaagccaaccaaaggcttcgcagacttcggtctcagcgagacg
accctcaaagctctaaagaaggtcaattacgaaacccccagtcccattcaagcagcgttc
atacccattgccgtgaccggcaaggactgcatgggacaggcccaaacgggcactggcaag
acggcctcttttgtactgccgtcactacaagccatcgacgatcgcattcccgctacacaa
gtgctcgtgctcacgcccacacgcgaattgagcgatcaagtcaatgcggaagcccagcgg
ctttgccacggcaccaaatgccgcaccaccagttgtgtgggaggcaaggacatccgcaag
cagatctccgacctcaaacgtggtgcacaaatcgcggtcggaacccccggacgggttttg
gatttgatttcccgcggcgtgctggatctctcaacactgaaaatcgtgatcctcgacgaa
gcggaccggatgctcgatatcggatttcgtcccgacatcgaaaagatcctccgcagctgt
cccgcaaaacggcaaacgttattgctctccgccacgatgccgccgccggtcgaacggttg
gcacgacggttcatgaacgaaccggaacgggtcgatctgtcgacgaaaggaatcgccgcc
accaccgtggagcaattctgcgtgacggtcgatcgcaatcgcaaatacgaactgctgacg
cgcgttttgtttcaagaaaaaccgcgacaagcaatcgtgtttacacgaaccaaacgcggc
gcggatgcactattgaagcggttgtcgcgcaaactgaccaagcaaatcgcggtgattcac
ggcgacttgcaacagcggcagcgagatcgcgtgctgaatggttttcgcgaaggcaacatt
cggttgttgattgcgaccgacgtgatgggacgtggtatcgacgtcagcggcgtctcacac
atcatcaactacgacattccggaattttgcgatgactacgtgcatcgcatcggccggacg
ggacggatgaatggcgaacttggccgcgggtttacattcgtcacccccgaagaaggggaa
caactgacgaatatcgagatccgcatcaacggtctgcttgagccgtatacggtgcccaat
ttcgatgccttcgaaccccgcaaaccgtacgatccggaaaaggcggccgaggaacgcgaa
aaagcgccccccgcacccacgcggaacggtcgtttccgccgcacggcgctcgcagcccgc
gtggtctga
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