Symmachiella dynata: Mal52_12860
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Entry
Mal52_12860 CDS
T06944
Symbol
hrdB_1
Name
(GenBank) RNA polymerase principal sigma factor HrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
sdyn
Symmachiella dynata
Pathway
sdyn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdyn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Mal52_12860 (hrdB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdyn03021
]
Mal52_12860 (hrdB_1)
Transcription machinery [BR:
sdyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Mal52_12860 (hrdB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
GDWWSH
ENT
Motif
Other DBs
NCBI-ProteinID:
QDU42818
UniProt:
A0A517ZK26
LinkDB
All DBs
Position
1604759..1605715
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AA seq
318 aa
AA seq
DB search
MSMVLVASRAKTAQRSSQSVSPEERDEVLQLLQEEIAYIHNGEFEHLDMDTVEQSVHHAG
IHRQQPSSGATVPDGLPAYLANLYTIPLLTAEGEAALFRKMNYLKYRANLCRVALDPDRP
QRKLTQELRRFLDAADRVRNQLAESNLRLVVSIARRFAGPRFSFEELVSEGNMILMKAIE
KFDYSRGYRFSTYATHSVQRHFFRHFRTTKRRNTHEVAMADEYLNELSDKSEQESDTLDI
SDAQVGEILAQLDEQLDEREQYIIQERFGIGPSGTARTLQSLSKELHVSKERVRQLHHKA
IAKLRKGLDHLFPEMMTV
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgtccatggtattggttgcaagtcgagcgaaaactgcacagcggtcgagtcaatccgtc
agccctgaagagcgcgatgaggtgctgcagcttctgcaggaagagattgcctatatccat
aacggggaattcgagcatctggatatggacactgttgaacaatcggtgcatcacgcggga
attcaccgccagcagccgtcctctggggcaaccgtcccggatgggcttcccgcttatttg
gcgaacctctacaccattccgttattaacggctgagggagaagcggcgttatttcgcaaa
atgaactacttaaaataccgcgcgaatttgtgtcgcgtcgcgctcgacccggatcgaccg
caacgcaagctgactcaggaattacgtcggttcttggatgcagcggatcgtgttcgcaat
cagctggcagaatcgaatctgcgactggtcgtctccatcgcacgccgttttgccggcccc
cggttttcctttgaagagttggtcagcgaaggcaacatgattttgatgaaggcgattgag
aagttcgattactcccgcggctaccgattcagcacctatgccacgcattccgtgcagcgg
catttcttccgtcattttcgcacgaccaaacggcgaaacacgcatgaagtggccatggcg
gatgagtatctgaatgaattgtccgacaagagcgagcaagaatcggacacactcgatatc
agtgatgcacaagtcggtgagatcctcgctcagctcgacgagcagttggatgagcgcgaa
cagtatattatccaagagcgatttggcattggtccgtcgggaaccgcgcggacgttgcaa
agcttgtcaaaagagctgcacgtcagtaaagaacgcgtccgccaattgcaccataaggca
atcgcaaaactgcgaaaaggattggaccacctcttcccggagatgatgacggtctga
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