Symmachiella dynata: Mal52_33790
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Entry
Mal52_33790 CDS
T06944
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdyn
Symmachiella dynata
Pathway
sdyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mal52_33790 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdyn03019
]
Mal52_33790 (rhlE)
Enzymes [BR:
sdyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mal52_33790 (rhlE)
Messenger RNA biogenesis [BR:
sdyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mal52_33790 (rhlE)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
ERCC3_RAD25_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDU44893
UniProt:
A0A517ZR23
LinkDB
All DBs
Position
complement(4234816..4236282)
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AA seq
488 aa
AA seq
DB search
MPGEKVTQIEENLLKTFQEIDLIAPVQRALADEKYETPTPIQAQTIPATMQGRDVLGCAQ
TGTGKTAAFAVPILNQLGQGNRKSTPKRPLVLALAPTRELAIQIGASFAVYGRHLKLRQA
LVYGGVNQGKQVRAMNRGAHILVATPGRLLDLMNQGHIKLDQLEMFVLDEADRMLDMGFL
PDLKRIISHLPEKRQSLFFSATLPPSIIKLSQSLLHKPVSVNVTPETTSVERIEQRLLYV
DRAEKKTLLKSILTSEGVDRALVFTKTKRTANLLEKQLLKDGIAATAIHGDKSQNARQRA
LEAFRRKQVKVLVATDVAARGIDIDNITHVVNFDLPIEPENYVHRIGRTGRAGAEGIALS
FCCGDERRELRSIERLIGQKVPIDPELSLPEPAEFKSGGSSHRRRDAGSKRSKFKRSASK
RSGAKNSGPKGPGAKGSGAKSSGAKSSGGKGAGKYRKVEAAGGPSASKPKRRPGRKPKKA
GQRPAHTA
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcgaaaaagtaacacagattgaggaaaaccttttgaagacgtttcaggaaatt
gatttgattgcgcccgtgcaacgtgcattggctgacgagaaatacgaaacccccacgccg
atccaggcgcaaaccattcccgccacaatgcagggacgggatgtgttggggtgcgctcaa
actgggactggaaaaacagcggctttcgccgtgccgattctcaaccaactcggacaagga
aatcgcaagtcgactcccaaacgcccgttggtattggccttggccccgacgcgggagttg
gcgatccagattggcgccagttttgcggtctatgggcggcatttaaaactgcggcaagca
ttggtctacggtggtgtgaatcaaggcaagcaggtccgggcgatgaatcggggagcccac
atcttggtggcgacaccgggacgtttgctcgacttgatgaaccaagggcacatcaaactg
gatcagttggaaatgttcgttttggacgaagcggatcgcatgctcgacatgggttttttg
ccggacctaaaacggatcatcagccatttgcccgagaaacggcaatcgctgttcttttcc
gccaccttgccgccgagcatcattaagttgtcgcaaagcctgctgcacaagccggtcagc
gtcaacgtaacgcccgaaacgacgagcgtggaacgcattgaacaacggttgttgtatgtc
gaccgggctgagaaaaagacgctgcttaagtcaattcttaccagtgaaggtgtcgatcgc
gccttggtgttcaccaagaccaagcggaccgccaacttactggaaaagcaattactcaaa
gatggcatagctgcgacagccattcatggcgacaaatcgcaaaacgcacggcaacgggcg
ttagaggcgtttcgccgcaaacaagtgaaagtgcttgtggcgaccgacgtcgctgctcgt
ggtatcgacattgataacatcacgcatgtcgtcaacttcgatctgccgatcgagccggaa
aactacgtgcatcggattggacgcacgggacgcgccggtgccgaagggatcgccctgtcg
ttttgctgtggggacgaacgtcgtgaattgcgatcgatcgagcgtctaatcgggcaaaaa
gtaccgattgatcccgagctatctttacccgaacctgctgaattcaaatcgggcggttca
tcgcatcgtcgccgggatgccggttcaaaacgttcgaagttcaaacggtctgcttccaag
cgttcgggggcgaaaaactccggtcccaaagggccaggtgcaaaaggttctggagccaaa
agttccggtgcgaaaagctctggtggcaaaggggcgggcaaataccgcaaggttgaagcc
gcgggcggtcccagtgcatcgaagccgaaacggcgacccggtcgcaagccgaaaaaagcg
ggtcaacgccccgcgcatacggcctaa
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