Symmachiella dynata: Mal52_49330
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Entry
Mal52_49330 CDS
T06944
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sdyn
Symmachiella dynata
Brite
KEGG Orthology (KO) [BR:
sdyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdyn03016
]
Mal52_49330 (rtcB_2)
Enzymes [BR:
sdyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Mal52_49330 (rtcB_2)
Transfer RNA biogenesis [BR:
sdyn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Mal52_49330 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
Mal52_49330 (rtcB_2)
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GFIT
Motif
Pfam:
RtcB
GSDH
Motif
Other DBs
NCBI-ProteinID:
QDU46413
UniProt:
A0A517ZVA3
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All DBs
Position
complement(6137204..6138349)
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AA seq
381 aa
AA seq
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MKDSGLHEKIQAWLSEPMPGEVRASLNRLAAHDDVGHMAVMPDVHLARHVCVGTVIATAT
QIFPAAIGGDIGCGMLAVALTADADRINNPVAAAKILSGLYECVPAGRHRRSHTVAALPE
ELNNLPLSHPRLETFSRRDGRVQLGTLGRGNHFVEFQADPENRLWLMLHSGSRGMGQAIT
AHHLAVDACSPNKTVAWDAESRNGAAYLTDMRWAIAYAWQNRLAMMTAIGRLLQQEFAID
LQRETLIHCDHNHVRQETHFGRELWVHRKGALPATAGEQGVIPGSMGTRSFHVVGRGCAE
ALQSSSHGAGRALSRHDARRVIGQKKLEREMQDVWIDRRRMEKFREEAPSAYKEIGRVMR
AQRALTRIERELRPVLCYKGT
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgaaggactcaggtctacatgagaaaatccaggcatggctcagcgagccaatgcctggc
gaggttcgtgcgtcgctcaatcgtttagcggcgcacgacgatgtagggcacatggccgtc
atgccggatgtacatttggctcgccatgtctgtgtgggaaccgttatcgcgaccgcgacg
cagatttttccagcagcgattggaggcgacattggttgcggcatgcttgccgtcgcctta
accgcggacgcagaccgcatcaacaaccctgtggctgcggcaaagatcctctccgggctg
tatgaatgtgttcccgccggccggcatcgtcgctctcacacggttgcggcgctcccggag
gaactgaacaatttgccgctgagccatccgcgactagaaacatttagtcgtcgagatggt
cgggtgcaattgggcacactcggccgcggaaatcatttcgtggagttccaggccgatcca
gagaaccggctgtggttgatgctgcacagtggttcacgaggaatgggacaggcgatcacg
gcgcatcatttggcggtcgacgcgtgttcgccaaacaaaacagtcgcatgggatgccgaa
tctcgcaacggcgccgcctatctcaccgacatgcgatgggccatcgcctatgcatggcaa
aatcgactggccatgatgacggcgatcggtcgactactccaacaagaattcgccatcgat
ctgcaacgagagaccctgattcattgcgatcataatcatgtccgacaggaaacacatttc
ggccgcgagctttgggtgcatcgcaagggggcattgccggcgactgcgggagagcagggg
gtgattcccggttcgatgggcacacgcagttttcacgtcgtgggacggggttgtgcagag
gctctccaatccagttcccacggcgccggccgcgcactcagccgccacgacgcacggcgg
gtcatcggccagaaaaaacttgaacgcgagatgcaggatgtctggattgatcggcggcgt
atggaaaaattccgcgaagaagccccgtcggcctataaggagattgggcgggtcatgcgg
gcacagcgcgccctgacgcgaatcgaacgcgagctgagacccgtgctgtgctacaaaggg
acttga
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