Salmonella enterica subsp. enterica serovar Agona SL483: SeAg_B2003
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Entry
SeAg_B2003 CDS
T00751
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sea
Salmonella enterica subsp. enterica serovar Agona SL483
Pathway
sea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SeAg_B2003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sea03019
]
SeAg_B2003
03009 Ribosome biogenesis [BR:
sea03009
]
SeAg_B2003
Enzymes [BR:
sea01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SeAg_B2003
Messenger RNA biogenesis [BR:
sea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SeAg_B2003
Ribosome biogenesis [BR:
sea03009
]
Prokaryotic type
rRNA processing factors
SeAg_B2003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
ACH51429
UniProt:
B5F922
LinkDB
All DBs
Position
1942569..1945772
Genome browser
AA seq
1067 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVMEMA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPDVPPA
PTPVEPAVSVATAKKDNVAAAQPAQPGLFSRFLNALKQLFSGEETKTVETAAPKAEEKAE
RQQDRRKPRQNNRRDRNERRDTRDNRAGRDGGESRDDNRRNRRQAQQQNAETRDTRQQET
AEKVKTGDEQQQTPRRERSRRRNDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRK
QRQLNQKVRFTNSAVVETVDTPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADITPEQ
DDSVEPRDNTGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKV
WIRYPIVRPQETQVVEEQREADLALPQPVVAEQQVIAATVALEPQASVQAVENVAVEPHT
VAEPQAPEVVEVETTHPEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVA
ENVADVVVVEPEEETKAEAAVVEHTAEETVIAPAQVVEKPQDVVCVDDHNHASAPMTRAP
APEYVPETPHHSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcgactcagcaggaagagttgcgcgtcgcccttgtagat
gggcagcgtctgtacgatctggatatagaaagccccggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtattgaaccgagcctggaagcggcttttgttgattac
ggcgcagaacgccacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgct
aactacagcgctcatggtcgcccgaacattaaagacgtgttacgcgaaggccaggaagtc
attgttcaaatcgataaagaagagcgcggcaacaaaggcgcggcgttaaccacctttatc
agtctggcgggcagctacctggtgctgatgccgaataacccgcgcgcgggtggtatctcc
cgtcgcattgaaggcgacgatcgtaccgagttaaaagaagcgttggccagcctggaactt
cctgaagggatggggcttatcgtacgtaccgcgggcgtgggtaaatccgccgaagcgttg
cagtgggatttaagcttccgcctgaaacactgggaagccattcagaaagccgctgaaagc
cgtcccgcgccgttcctgatccatcaggaaagcaacgtcatcgtacgcgcgtttcgcgac
tatctgcgtcaggatatcggtgaaatcctgatcgacaatccaaaagtgatggaaatggcg
cgtcagcatatcgccgcgttgggccgcccggattttagcagcaaaattaagctgtacacc
ggtgaaatcccgttgttcagccattaccagatcgaatcgcagatcgagtcagcgttccag
cgtgaagtgcgcctgccctccggcggctccatcgtcattgacagtaccgaagcgttaacc
gccatcgatatcaactccgcccgcgcgactcgcggcggcgatatcgaagaaaccgcgttc
aacaccaatctcgaagcggccgatgagattgcccgtcagttgcgtctgcgcgacctgggc
ggcctgatcgttatcgactttatcgatatgacgccggtacgtcaccagcgcgcggtagaa
aaccgtctgcgtgaagcggtgcgtcaggaccgggcgcgtattcagattagccatatttcc
cgcttcggcctgctcgaaatgtcgcgtcagcgcctgagcccgtcgctgggcgaatccagc
catcacgtgtgtccgcgctgtagcggtaccggcaccgtgcgcgataacgaatctctgtcg
ctgtccattctgcgcctgattgaagaagaagcgctgaaagagaatacgcaggaagtccat
gccattgttccggtgccgatcgcctcttatctgcttaacgaaaaacggacggcagttaac
gctattgagacgcgtcaggatggcgtccgctgtgtcatcgtcccgaacgatcagatggaa
acgccgcactattccgtgctgcgcgtacgcaaaggggaagaaacgccgaccctgagctac
atgctgccgaagctgcacgaagaagcgatggcgctgccttctgaagaagagtacgccgag
cgtaaacgcccggaacagcctgcgctggcgacattcgctatgccagatgtgcctccagcg
ccgacgcctgtcgaaccggcggttagcgtcgccacggcgaaaaaggataatgttgccgcc
gcgcagcctgcccagccgggtctgtttagccgcttccttaacgcgctgaaacaactgttc
agcggtgaagaaacgaaaaccgtcgaaacagccgcgccgaaagcggaagaaaaagcggag
cgtcagcaggatcgacgcaagccacggcagaataaccgtcgcgatcgtaacgaacgccgc
gacacccgtgataaccgtgccggacgtgacggcggcgagagccgcgacgataatcgtcgt
aaccgtcgccaggcgcagcagcaaaatgcggaaacgcgcgatacccgccagcaggaaacg
gcggaaaaagtgaaaaccggcgatgagcagcaacagacgccgcgtcgcgaacgcagccgc
cgccgcaatgatgacaagcgccaggcgcagcaggaagtaaaagcgcttaaccgcgaagaa
cagcctgtccaggagaccgagcaggaagaacgcgttcagcaggttcagccgcgccgcaag
cagcgtcagcttaatcagaaagtccgctttaccaacagcgcagtggttgaaacggttgac
acgccggtcgtcgtcgacgaaccacgcccggttgaaaacgttgaacagcccgttccagcg
ccgcgtaccgagctggcgaaagttgatttacctgtcgttgccgatatcacgccggagcag
gatgatagcgtagaacctcgcgataataccggtatgccgcgtcgctcccgccgttctccg
cgccacctgcgcgtaagcggtcagcgtcgccgtcgctatcgtgacgagcgctacccgaca
caatcgccaatgccgttaaccgtcgcctgcgcgtcgccggaaatggcatccggtaaagtc
tggatccgctacccgattgtccgtccgcaggaaacgcaggttgttgaagagcagcgtgaa
gcagatctggcgctgccacaaccggttgtcgctgaacagcaggttatcgctgcgaccgta
gcgctcgaaccacaagcgtcggtacaggcggtagaaaacgttgccgttgagccgcatact
gtcgccgaaccacaggcgccggaagtcgtcgaggtcgagacaacgcatccggaagtcatt
gccgcgccagttgatgaacagccgcaactgattgccgaaagcgatacgccggtggcgcaa
gaggttattgctgacgccgaaccggtagcagaaaccgccgacgcgtccattacggtggct
gaaaacgtagctgatgttgtcgttgtcgagccagaagaagagacaaaagcggaagcggct
gttgtggagcacacggcagaagaaaccgttatcgcaccggcccaggtggtggaaaagccg
caggacgttgtctgcgttgacgatcataaccacgccagcgcgccgatgacgcgtgcgcca
gcgccggaatatgtgccggaaaccccgcaccatagcgactggcagcgcccttccttccac
tttgaaggtaaaggcgcagcaggcggacacagcgccacacgtcacgccagcgccccggca
acacgaccacagccggtagaatga
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