KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_0658
Entry
STM474_0658       CDS       T01760                                 
Symbol
dacA
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase fraction A
  KO
K07258  serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00550  Peptidoglycan biosynthesis
seb01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    STM474_0658 (dacA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:seb01002]
    STM474_0658 (dacA)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
    STM474_0658 (dacA)
Enzymes [BR:seb01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     STM474_0658 (dacA)
Peptidases and inhibitors [BR:seb01002]
 Serine peptidases
  Family S11: D-Ala-D-Ala carboxypeptidase A family
   STM474_0658 (dacA)
Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   STM474_0658 (dacA)
SSDB
Motif
Pfam: Peptidase_S11 PBP5_C Beta-lactamase2
Other DBs
NCBI-ProteinID: ADX16384
UniProt: E8X9Z6
LinkDB
Position
complement(697889..699100)
AA seq 403 aa
MKTTFSARFMQRMALTTALCAAFISTAHADDLNIKTMIPGVPQIDAESYILIDYNSGKVL
AEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGNDAWATGNPVFKGSSLMFL
KPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVGLMNSYVNALGLKNTHFQTVH
GLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFTFNGIRQLNRNGLLWDNSLNVDG
IKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKGRETESKKLLTWGFRFFETVNPLKA
GKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRMKDLKASYVLNTAELHAPLQKNQVVGT
INFQLDGKTIEQRPLVVLQEIPEGNFFGKIIDYIKLMFHHWFG
NT seq 1212 nt   +upstreamnt  +downstreamnt
atgaagaccactttttccgctcgttttatgcagcgcatggcgctcaccacggcgctttgt
gccgcgtttatctcaaccgcacatgccgatgacctgaatatcaaaactatgatcccgggc
gttccgcagatcgatgcggaatcctacatcctgatcgactacaactccggcaaagttctg
gcggaacaaaacgccgacgaacgtcgcgacccggctagtctgacgaagatgatgaccagt
tacgtcatcggacaggcaatgaaagcgggtaaatttaaagaaaccgacctggttaccgtc
ggtaatgacgcctgggccaccggcaatccggtatttaaaggctcctcgctgatgttcctc
aagccgggaatgcaggtaccggtctctcagttgatacgcggcatcaatctgcaatccggc
aatgacgcctgtgtggcgatggctgatttcgccgccggtagccaggatgctttcgtcggg
ctgatgaacagctatgtgaacgcgttggggctgaaaaatacccacttccagaccgtacac
ggcctggacgccgacggacaatacagttcagctcgcgatatggcgctgattggtcaggcg
ttaattcgcgatgtgccgaacgaatatgccgtttataaagaaaaagagttcacctttaac
ggcattcgccagttaaaccgtaacggtctgctgtgggataacagcctgaatgtggacggc
atcaaaaccggccataccagcaaagcgggctataatctggtcgcttccgcaaccgaaggc
cagatgcgattgatttccgccgtgatgggcggacggacctataaaggccgtgaaacagaa
agcaaaaaactgctgacgtggggcttccgtttctttgaaaccgttaatccgctgaaggct
ggtaaagagttcgcctctgaacccgcctggtttggtaataccgatcgcgcctcgctgggc
gtcgataaagacgtttacctgacgatccctcgcggtcgcatgaaagatttgaaagcgagc
tatgtactgaataccgcagaactgcacgcgccgctgcagaaaaaccaggtggtcggcacc
atcaacttccagctggacggtaaaaccatcgagcagcgtccgctggtcgtactgcaagag
atcccggaagggaacttcttcggtaaaatcattgattacattaaattaatgttccatcac
tggtttggataa

KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_0889
Entry
STM474_0889       CDS       T01760                                 
Symbol
dacC
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase fraction C
  KO
K07258  serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00550  Peptidoglycan biosynthesis
seb01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    STM474_0889 (dacC)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:seb01002]
    STM474_0889 (dacC)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
    STM474_0889 (dacC)
Enzymes [BR:seb01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     STM474_0889 (dacC)
Peptidases and inhibitors [BR:seb01002]
 Serine peptidases
  Family S11: D-Ala-D-Ala carboxypeptidase A family
   STM474_0889 (dacC)
Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   STM474_0889 (dacC)
SSDB
Motif
Pfam: Peptidase_S11 PBP5_C Beta-lactamase2 Beta-lactamase CD52
Other DBs
NCBI-ProteinID: ADX16600
UniProt: E8XCL1
LinkDB
Position
934758..935960
AA seq 400 aa
MTQYASSLRSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWILMDYASGKVLAEGNADE
KLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGNPALRGSSVMFLKPGDQVS
VADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAKRLGLTNTTFQTVHGLDAPGQ
FSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQPNRNRLLWSTNLHVDGMKTGTTA
GAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEKLLTWGFRFFETVTPIKPDATFVTQ
RVWFGDKHEVNLGAGDAGSVTIPRGQLKNLKASFTLNEPQLTAPLKKGQVVGTIDFQLNG
KSIEQRPLMVMENVEEGGFFSRMWDFVLMKLHQWFGSWFS
NT seq 1203 nt   +upstreamnt  +downstreamnt
atgacgcaatacgcttcttcccttcgtagcctcgcggcaggttcggttctcttattcctt
ttcgcttcgcctgtaaaggcagaggaacaaacgatcgcgccgccgggcgttgatgcgcga
gcctggatcttaatggattacgccagcggtaaagtactggcggaaggcaacgccgatgag
aaactcgaccctgccagtttgacaaaaattatgaccagctacgtggtgggccaggcgctg
aaggcagggaaaatcaagctgaccgatatggtgacggtgggcaaagatgcctgggcgacg
gggaacccggcgctacgtgggtcgtcggtgatgtttctgaagccaggcgatcaggtgtcg
gttgcggatcttaataaaggcatcatcattcagtcaggtaacgatgcctgtatcgcgctt
gccgactacgtcgccggaagccaggagtcctttatcggcctgatgaacgcctatgcgaaa
cgactggggttaaccaatacaaccttccagacggtacacggtcttgatgcgccagggcag
ttcagtaccgctcgcgatatggcgttgctcggcaaggccttgattcacgatgtgcctgac
gaatacgccattcataaagaaaaagaatttacttttaataatattcgtcagccaaaccgc
aaccgcctgttgtggagcaccaatctgcatgtcgacggcatgaaaacggggacaacggct
ggcgctgggtataaccttgtcgcctccgccacccagggcgatatgcgcctgatctctgtc
gtgctgggggcgaaaacggaccgtattcgttttaatgagtcagaaaaactgctgacctgg
ggtttccgcttctttgaaacggtcacgccgattaaacctgacgcgacattcgtgacgcag
cgggtctggtttggcgataagcatgaggtcaatttgggggcgggcgatgcggggtctgtg
acgattccgcgtgggcagcttaaaaacctgaaggccagctttacgttgaacgaaccacag
ctcacggcgccgttgaagaaagggcaggttgtcggcaccatcgatttccagcttaacgga
aaatccattgagcaacgcccgttaatggtgatggaaaacgtcgaggaggggggatttttc
agccggatgtgggattttgtgctgatgaaactccatcagtggtttggcagttggttctcg
taa

KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_2147
Entry
STM474_2147       CDS       T01760                                 
Symbol
dacD
Name
(GenBank) D-alanyl-D-alanine carboxypeptidase
  KO
K07258  serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00550  Peptidoglycan biosynthesis
seb01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    STM474_2147 (dacD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:seb01002]
    STM474_2147 (dacD)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
    STM474_2147 (dacD)
Enzymes [BR:seb01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     STM474_2147 (dacD)
Peptidases and inhibitors [BR:seb01002]
 Serine peptidases
  Family S11: D-Ala-D-Ala carboxypeptidase A family
   STM474_2147 (dacD)
Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
 Peptidoglycan biosynthesis and degradation
  DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
   STM474_2147 (dacD)
SSDB
Motif
Pfam: Peptidase_S11 PBP5_C Beta-lactamase2 Beta-lactamase CDPS
Other DBs
NCBI-ProteinID: ADX17815
UniProt: E8XC16
LinkDB
Position
complement(2133740..2134912)
AA seq 390 aa
MLLKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLMDYTTGQVLTAGNEHQQ
RNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNPVFVGSSLMFLKEGDRVSV
RDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKKLNLQDTHFETVHGLDAPGQH
SSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRNGLLWDKTMHIDGLKTGHTSG
AGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKLLQWGQQNFATVQILHSGKKVGSER
IWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYVLDRKELEAPIAAHQQVGEIELYDRDK
LIAQWPLVTLESVGKGGMFSRLSDYFQHKA
NT seq 1173 nt   +upstreamnt  +downstreamnt
atgctgttgaaacgccgtttgtttattgccgcttctttattcgcgatgcacctttctcct
gcgcttgcggccgatgccgtaagttttgctccccaaccgccagccattgatgcaggcgcc
tgggtgttgatggattacactacgggacaggttcttaccgccggtaatgaacaccagcaa
cgtaatcccgccagccttaccaagctaatgacgggctacgtcgtcgatcgcgccatcgat
agtcatcgtatcagccctgacgatatcgtcacagttgggcgcgacgcctgggcgaaggat
aatccggtgtttgtcggctcctcgttgatgtttttaaaagaaggggatcgcgtgtcggtg
cgtgatttaagccgtggcttaatcgtggattccggtaacgatgcctgtgtggcgctggcg
gattatatcgcgggcgggcagccgcagtttgtggcgatgatgaacagctatgtgaaaaaa
ctcaatttacaggatacccattttgaaaccgtccacggtctggatgcgccgggacaacat
agctccgcgtatgacctggccgtactctcccgggcgattattcacggcgagcctgaattt
tatcacatgtacagcgagaaaagcctgacctggaacggcatcacgcagcagaaccgtaac
ggcttgttatgggataagaccatgcatatcgatgggcttaaaaccggacacacatcgggg
gcgggatttaatcttatcgcatcggcggtggacgggcagcgtcgacttatcgccgttgtg
atgggggcgaaaagttcgaaaggtcgtgaggaacaggcgcgaaaactgttgcagtggggc
cagcaaaactttgcgacggtgcagattttgcacagcggtaaaaaagtgggcagcgagcga
atctggtatggagacaaagaaaagattgcgctgggtacggaacaggacttctggatggcg
ctgcctaaagcggaaattccgcatatcaaagcaaaatatgtgctggatagaaaagagctg
gaggcgccaatcgccgctcatcaacaggtaggtgaaatagagctctacgatcgggataaa
ctgatcgctcagtggccgctggtcactctggaatcggtgggtaaaggcggtatgttctct
cgtctgagcgactattttcagcataaagcgtaa

KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_3660
Entry
STM474_3660       CDS       T01760                                 
Symbol
mrcA
Name
(GenBank) penicillin-binding protein 1A
  KO
K05366  penicillin-binding protein 1A [EC:2.4.99.28 3.4.16.4]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00550  Peptidoglycan biosynthesis
seb01100  Metabolic pathways
seb01501  beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    STM474_3660 (mrcA)
 09160 Human Diseases
  09175 Drug resistance: antimicrobial
   01501 beta-Lactam resistance
    STM474_3660 (mrcA)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01003 Glycosyltransferases [BR:seb01003]
    STM474_3660 (mrcA)
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
    STM474_3660 (mrcA)
Enzymes [BR:seb01000]
 2. Transferases
  2.4  Glycosyltransferases
   2.4.99  Transferring other glycosyl groups
    2.4.99.28  peptidoglycan glycosyltransferase
     STM474_3660 (mrcA)
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.16  Serine-type carboxypeptidases
    3.4.16.4  serine-type D-Ala-D-Ala carboxypeptidase
     STM474_3660 (mrcA)
Glycosyltransferases [BR:seb01003]
 Polysaccharide
  Bacterial polysaccharide (excluding LPS)
   STM474_3660 (mrcA)
Peptidoglycan biosynthesis and degradation proteins [BR:seb01011]
 Peptidoglycan biosynthesis and degradation
  Glycosyltransferase/DD-Transpeptidase (Class A PBP)
   STM474_3660 (mrcA)
SSDB
Motif
Pfam: Transgly PCB_OB Transpeptidase DUF3502
Other DBs
NCBI-ProteinID: ADX19282
UniProt: E8XEJ6
LinkDB
Position
3668148..3670724
AA seq 858 aa
MTLNGKSPVKFVKYLLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRLQIPMQVYS
ADGELIAQYGEKRRIPVTLDQIPPEMINAFIATEDSRFYEHHGIDPVGIFRAASVALFSG
HASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQLLNKNEILELYLNKIYLGYR
AYGVGAAAQVYFGKTVDQLSLSEMAVIAGLPKAPSTFNPLYSMDRAIARRNVVLSRMLSE
GYITQAQYDQARSEPIDANYHAPEIAFSAPYLSEMVRQEMYNRYGESAYEDGYRIYTTIT
RKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGETAWDSKKITDTLKALPTYGPLLPA
VVTSANPQEATAALADGTSVSLHMEGMRWARPYRSDTQQGPTPRKVTDVVQTGQQIWVRQ
VDNDWWLAQVPEVNSALVSLNPQTGAVLALVGGFDFNQSKFNRATQALRQVGSNIKPFLY
TAAMDKGLTLASMLNDVPISRWDAGAGSDWRPKNSPPQYAGPIRLRQGLGQSKNVVMVRA
MRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSASFTPMQVARGYAVMANGGFLIDPYFI
SKIENDQGGVIFEAKPKIACPECDIPVIYGNTQKSDVLENTNVEEVAVSQEQQNSAVPMP
ELEQANQALVAQNGTQEYAPHVINTPLAFLIKSALNTNIFGEPGWMGTGWRAARDLKRRD
IGGKTGTTNSSKDAWFSGYGPGVVTSVWIGFDDHRRDLGRTTASGAIKDQISGYEGGAKS
AQPAWDAYMKAVLEGVPEQPLTPPPGIVTVNIDRSTGQLASGGNSREEYFIEGTQPTQQA
VHEVGTTIIDNGETHELF
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgacactaaatgggaagtctccagtgaagttcgtaaagtatttattgatccttgcagta
tgttgcatcctgctgggagcaggctcgatttatggcctttatcgctatattgagccacag
ctacctgacgtcgcgacattgaaagatgtgcgtttgcaaattccgatgcaggtttacagc
gcggatggcgaacttatcgcgcaatatggcgaaaaacgtcgtattcccgttacgctcgat
caaattccgccggaaatgatcaacgcctttatcgccaccgaagatagccgcttttatgag
catcacggcattgacccggtaggtattttccgtgcggccagcgtcgcgctcttctccggt
cacgcatcgcagggagcaagtaccattacccagcaactggcgcgaaacttcttccttagc
cccgaacgcacgctgatgcgcaagatcaaggaagcgtttctggcgattcgtattgagcag
ttgctgaataaaaatgagatcctcgaactctatctgaacaagatctatctcggctaccgc
gcctatggcgttggcgcggcggcacaggtctactttggtaagacggtcgaccagcttagt
ctaagcgaaatggcggttatcgccgggctaccgaaagcgccttctacctttaacccgctc
tactcgatggatcgggcgatagcgcgccgtaacgtagtgctttcgcgaatgttaagcgag
ggatatatcactcaggcgcagtacgatcaggcccgtagcgaacctatcgacgcaaattat
cacgcgccggaaatcgccttctccgcgccttatctgtcggaaatggtgcgccaggaaatg
tataaccgttatggcgaaagcgcttacgaagatggttatcgtatttacacgaccatcacc
cgcaaagtgcagcaggccgcgcaacaggcggtgcgtaataacgtgctggactatgacatg
cgccacggttatcgcggcccggcgaatgtgctatggaaagtgggcgaaacagcgtgggac
agtaaaaaaattaccgatacgttgaaagcgttgccgacctacggaccgctgcttcccgcc
gtggtcaccagcgctaatccgcaagaggcgaccgctgcgcttgccgacggtacgtccgtt
tcgctacatatggaaggaatgcgttgggcgcggccttaccgctcggatacgcagcagggg
ccgacgccgcgtaaagttaccgatgtcgtccagacaggtcagcaaatctgggttcgtcag
gtggataacgactggtggctggcgcaggtaccggaagtgaactccgcgctggtttcgctt
aacccgcaaacaggcgcggtactggcgctggtcggcggtttcgattttaatcagagtaaa
tttaaccgcgcgacgcaagctttgcgtcaggtggggtcgaacatcaaaccgttcctctac
accgccgcaatggataaagggctgacgctcgccagtatgctcaacgatgtgccgatttcc
cgctgggacgccggggcaggttcagactggcgtccgaaaaactccccgccgcagtacgcc
ggaccgattcgtttacgccaggggctggggcagtcgaaaaacgtggtgatggtacgcgcc
atgcgcgccatgggcgtcgactatgcggcggagtatttgcaacgcttcggcttcccggcg
cagaatatcgtgcataccgaatcgctggcgctgggctccgcctccttcacgccgatgcag
gttgcgcgcggttatgcggtgatggcgaacggcggtttcctgatcgacccgtatttcatc
agcaagattgagaacgatcagggcggcgtgatcttcgaagcgaaaccgaaaatcgcctgc
ccggagtgcgatatcccggtcatttacggcaatacgcagaaatctgacgtgctggaaaac
accaatgtggaagaggtcgcggtttcgcaagagcagcaaaacagcgccgtaccgatgcct
gagctggaacaggcaaaccaggcgctggtcgcgcaaaacggcacgcaggaatacgcgccg
catgtgatcaatacgccgctggcgtttctgatcaaaagcgcgctgaacaccaatatcttt
ggcgaacccggctggatgggtaccggctggcgtgcggcgcgcgaccttaaacgtcgcgat
atcggcggcaaaaccggtacgaccaacagctcgaaagacgcatggttctccggctatggt
cctggcgtcgtcacttccgtatggatcggctttgacgatcaccgccgtgatttaggccgc
accaccgcttccggcgcgatcaaagatcaaatctccggctatgagggcggcgcgaagagc
gcgcaacctgcatgggacgcctatatgaaagccgtgctggaaggcgtgccggaacagccg
ctaacgccgccgccgggcatcgtcacggtgaatatcgaccgcagtaccggacaactggcg
agcggcggtaacagccgtgaagagtatttcatcgaaggcacgcagccgacacaacaggcg
gtacacgaggtgggaaccaccattattgataatggtgaaacacacgaactgttctga

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