KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_2454
Entry
STM474_2454       CDS       T01760                                 
Symbol
ubiX
Name
(GenBank) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase
  KO
K03186  flavin prenyltransferase [EC:2.5.1.129]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00130  Ubiquinone and other terpenoid-quinone biosynthesis
seb00627  Aminobenzoate degradation
seb00740  Riboflavin metabolism
seb00900  Terpenoid backbone biosynthesis
seb01100  Metabolic pathways
seb01110  Biosynthesis of secondary metabolites
seb01120  Microbial metabolism in diverse environments
seb01220  Degradation of aromatic compounds
seb01240  Biosynthesis of cofactors
Module
seb_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
seb_M00989  Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    STM474_2454 (ubiX)
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    STM474_2454 (ubiX)
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    STM474_2454 (ubiX)
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    STM474_2454 (ubiX)
Enzymes [BR:seb01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.129  flavin prenyltransferase
     STM474_2454 (ubiX)
SSDB
Motif
Pfam: Flavoprotein
Other DBs
NCBI-ProteinID: ADX18118
UniProt: E8XF10
LinkDB
Position
complement(2464298..2464867)
AA seq 189 aa
MKRLIVGISGASGAIYGVRLLQILRDVDSVETHLVMSQAARQTLALETHFSLREVQALAD
VTHDARDIAASISSGSYPTAGMVILPCSIKTLSGIVHSYTDGLLTRAADVILKERRPLVL
CVRETPLHIGHLRLMTQAAEIGAVIMPPVPAFYHLPQTLDDVINQTVNRVLDQFDIPLPH
DLFVRWQGA
NT seq 570 nt   +upstreamnt  +downstreamnt
atgaaacgactcattgtaggaattagcggcgccagcggagcgatttatggcgtgcgctta
ttacaaattttgcgcgatgtcgatagcgtggaaacgcatctggtgatgagccaggcggcc
cggcaaacgctggcgctggagacccatttttcgctgcgcgaggtgcaggcgctggccgat
gtgacgcacgatgcgcgcgacattgccgccagcatttcctcgggctcttacccgacggcg
ggaatggttatcttgccctgttcgattaaaacgctgtcggggattgtccacagttatact
gacggactgcttacccgcgcggcggatgtgatattaaaagagcggcgacctctggtgctg
tgtgtgcgcgaaacgccgctgcatatcgggcatttgcgtttaatgacccaggccgctgag
ataggcgcggtgattatgccgccggttccggctttttatcatcttcctcagacgttagat
gatgttataaatcaaacggttaaccgagtgctggatcagtttgatatcccccttccgcac
gatctttttgttcgctggcagggcgcatag

KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_3061
Entry
STM474_3061       CDS       T01760                                 
Name
(GenBank) putative flavoprotein
  KO
K03186  flavin prenyltransferase [EC:2.5.1.129]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00130  Ubiquinone and other terpenoid-quinone biosynthesis
seb00627  Aminobenzoate degradation
seb00740  Riboflavin metabolism
seb00900  Terpenoid backbone biosynthesis
seb01100  Metabolic pathways
seb01110  Biosynthesis of secondary metabolites
seb01120  Microbial metabolism in diverse environments
seb01220  Degradation of aromatic compounds
seb01240  Biosynthesis of cofactors
Module
seb_M00117  Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
seb_M00989  Ubiquinone biosynthesis, O2-independent, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    STM474_3061
   00130 Ubiquinone and other terpenoid-quinone biosynthesis
    STM474_3061
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    STM474_3061
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    STM474_3061
Enzymes [BR:seb01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.129  flavin prenyltransferase
     STM474_3061
SSDB
Motif
Pfam: Flavoprotein
Other DBs
NCBI-ProteinID: ADX18703
UniProt: E8XL49
LinkDB
Position
3085743..3086336
AA seq 197 aa
MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIELETPYTPAEVAALADY
CHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYAEGLVGRAADVVLKEGRKLVLV
PREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDDIIQHIVARVLDQFGLEHTRT
RRWQGLRQTANFSQENG
NT seq 594 nt   +upstreamnt  +downstreamnt
atgagattgattgtggggatgaccggtgcgaccggcgcgccgcttggcgtcgagctactc
caggcattgcgggcgatacctgatgttgaaacgcatctggtaatgtcaaagtgggcgaaa
accactattgaactggagacgccctacacgcccgctgaggtagccgccctggcagattat
tgtcatagcccggccgatcaggcggcgaccatttcctccggctcatttcgtaccgacggc
atgattattatcccctgcagtatgaaaacactggcgggggttcgcgccggctatgccgag
gggctggtgggacgcgctgccgatgtcgtgttgaaagagggtcgcaagctggtgcttgtg
ccgcgggaaatgccgctcagcacgattcatctggaaaacatgcttgcgctttctcgtatg
ggggtggcgatagtgccgcccatgcccgcgttctacaacctgccgcaaaccgttgacgat
attatccagcacatcgtagcgcgcgttctcgaccagtttggtctggagcatacgcgcacg
cgccgctggcaaggactgcgacagacagcaaatttttcacaggagaatggataa

KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_3062
Entry
STM474_3062       CDS       T01760                                 
Name
(GenBank) putative 3-polyprenyl-4-hydroxybenzoate decarboxylase
  KO
K01612  vanillate/4-hydroxybenzoate decarboxylase subunit C [EC:4.1.1.- 4.1.1.61]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00627  Aminobenzoate degradation
seb01120  Microbial metabolism in diverse environments
seb01220  Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    STM474_3062
Enzymes [BR:seb01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.1  Carboxy-lyases
    4.1.1.61  4-hydroxybenzoate decarboxylase
     STM474_3062
SSDB
Motif
Pfam: UbiD UbiD_C UbiD_N
Other DBs
NCBI-ProteinID: ADX18704
UniProt: E8XL50
LinkDB
Position
3086336..3087763
AA seq 475 aa
MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGDGAPALWFDNIRGFTDA
RVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVAPERRANPGWAENTVDGDA
INLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQNVGIYRMEVKGKRKLGLQPV
PMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATPLKYDQSEYEMAGALRESPYPIA
TAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFTGHYSGGRNMTVVRIDKVSYRSKPI
FESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFPEVQAVNAMYTHGLLAIISTKKRYGGF
ARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFNLPQVMWALSSKVNPAGDLVQLPNMSVLE
LDPGSSPAGITDKLIIDATTPVAPDNRGHYSQPVVDLPETKAWAEKLTAMLANRK
NT seq 1428 nt   +upstreamnt  +downstreamnt
atggcatttgatgatttgcgcagttttttacatgcgctggatcagcagggacaactgctg
aaaatcagcgaggaagtgaatgcggagccggatctcgcagccgctgccaacgcaacggga
cgcatcggcgatggcgcgcccgcgctgtggtttgacaatattcgtggttttaccgacgcc
cgcgtggcgatgaataccatcggttcctggcagaaccatgccatctcactgggtttgccg
cctaacacgccggttaaaaaacagatcgatgaatttattcgccgctgggacaattttccg
gtagcgccggaacggcgggcgaatccgggctgggcggaaaataccgtcgacggcgacgcg
atcaacctgtttgatatcctgccgctgtttcgtctgaacgacggcgacggcggattctat
ctggataaagcctgtgtggtatcacgcgatccgctcgatcccgataacttcggcaagcag
aatgtcggcatctaccgcatggaagttaaaggcaagcgtaagctgggtctgcaaccagtg
ccgatgcatgatatcgcattgcacctgcacaaagctgaagagcgcggggaagatctgccg
attgcgatcacgttgggtaacgatccgatcattaccctgatgggcgcaacgccgctgaaa
tacgatcagtcagagtatgaaatggcaggcgcgctgcgtgaaagcccctatcctatcgcc
accgcgccgctgaccggttttgatgtgccgtggggatctgaagtcattcttgaaggggtc
atcgaaagccgtaaacgtgaaattgaaggaccgttcggcgaatttaccggccactattcc
ggcggtcgcaacatgaccgtggtgcgtatcgataaggtctcttaccgcagcaaacccatt
tttgaatcgctctatttgggtatgccgtggacggaaatcgactacctgatggggccggcg
acctgcgtgccactgtatcaacagctgaaagccgaatttccggaagtgcaggcggtaaac
gccatgtacacccacggcttgctggccatcatctcgaccaaaaaacgctacggcggcttt
gcccgtgcggtgggcctgcgagcgatgacgacgccgcacggtctgggatatgtgaagatg
gtgatcatggtcgatgaagatgtcgatccattcaatctgccacaggtgatgtgggcgttg
tcgtcgaaagtgaatccggcaggcgatctggtacagctaccgaatatgtccgtcctggaa
ctggatccgggctcaagcccggcggggattaccgacaagctgatcattgacgccaccacg
ccggttgcgccagataaccgtggtcactatagccagccggttgttgatttaccggaaact
aaagcctgggctgaaaagctgaccgccatgctggccaaccgtaaataa

KEGG   Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_3063
Entry
STM474_3063       CDS       T01760                                 
Name
(GenBank) putative cytoplasmic protein
  KO
K21759  vanillate/4-hydroxybenzoate decarboxylase subunit D [EC:4.1.1.- 4.1.1.61]
Organism
seb  Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb00627  Aminobenzoate degradation
seb01120  Microbial metabolism in diverse environments
seb01220  Degradation of aromatic compounds
Brite
KEGG Orthology (KO) [BR:seb00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    STM474_3063
Enzymes [BR:seb01000]
 4. Lyases
  4.1  Carbon-carbon lyases
   4.1.1  Carboxy-lyases
    4.1.1.61  4-hydroxybenzoate decarboxylase
     STM474_3063
SSDB
Motif
Pfam: Zn_ribbon_IS1595 DUF1062 zf-C2H2_7th_ZNF462 DUF5795 DUF982 Zn_ribbon_TFIIB
Other DBs
NCBI-ProteinID: ADX18705
UniProt: E8XL51
LinkDB
Position
3087774..3088010
AA seq 78 aa
MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRTSREHYPQAFRMTQKDI
DDAPMVPSIPPLLAEDKR
NT seq 237 nt   +upstreamnt  +downstreamnt
atgatttgcccacgctgtgccgatgcacatattgaactcatggcgacttcgccggtaaaa
ggagtctggacggtatatcagtgtcagcattgtctgtatacctggcgcgataccgaaccg
ttacgccgtaccagccgcgaacactatccacaagcgtttcgcatgacgcaaaaagatatt
gatgacgcgccaatggtgccgagtatcccgccgctgctggcagaagacaaacggtaa

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