Salmonella enterica subsp. enterica serovar Typhimurium ST4/74: STM474_3438
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Entry
STM474_3438 CDS
T01760
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
seb
Salmonella enterica subsp. enterica serovar Typhimurium ST4/74
Pathway
seb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
STM474_3438 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seb03019
]
STM474_3438 (deaD)
03009 Ribosome biogenesis [BR:
seb03009
]
STM474_3438 (deaD)
Enzymes [BR:
seb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
STM474_3438 (deaD)
Messenger RNA biogenesis [BR:
seb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
STM474_3438 (deaD)
Ribosome biogenesis [BR:
seb03009
]
Prokaryotic type
rRNA helicases
STM474_3438 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_C
ResIII
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
ADX19070
UniProt:
E8XC97
LinkDB
All DBs
Position
complement(3466890..3468779)
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AA seq
629 aa
AA seq
DB search
MAEFETTFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
VLRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELD
LETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRER
RDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGE
VLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGD
GRRFSGERRESRGPRRDDSTGRRRFGGDA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctggggctgaaggctcctatccttgaagcc
cttaccgatctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctg
ctgggcggtcgcgacgtgctgggcatggcccagaccggtagcggcaaaaccgcagcgttc
tctttaccgctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcgccaacccgcgaactggcggtacaggttgccgaagccatgacggatttctctaaacac
atgcgcggcgtaaacgtggttgccttgtacggcggtcagcgttatgacgtgcagttacgc
gtcctgcgtcaggggccgcagatcgttgtcggtacgccgggacgtctgcttgatcactta
aaacgcggcaccctcgacctctctaaactgagtggtctggtgctggatgaagccgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaactattatggcgcagatcccggaaggt
catcagaccgctctgttctccgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatc
agccagagctactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagcggaagactttgatgcggcgattatcttcgtgcgtaccaaaaacgcgaccctggaa
gtagcagaagcgctggaacgtagcggctacaacagcgccgcgttgaatggcgatatgaac
caggcgctgcgtgagcagactctggaacgcctgaaagatggtcgtctggacatcctgatc
gctaccgacgttgcggcacgtggtctggacgttgaacgtatcagcctggtggtgaactac
gatattccgatggactccgagtcctacgttcaccgtatcggtcgtaccggccgtgcgggt
cgcgccggtcgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatc
gaacgcaccatgaagctgaccattccggaagtggaactgccgaacgcagaactgctgggt
aaacgccgtctggaaaaattcgccgcgaaagttcagcagcaactggaaagcagcgatctg
gatcagtaccgtgcgctgctggcgaaaatccagccgtctgccgaaggtgaagagctggat
ctcgaaacgctggccgccgcactgctgaaaatggcgcagggcgagcgtccgctgatcctg
ccgccggatgcgccgatgcgtcctaagcgtgaattccgtgaccgtgacgaccgtggtccg
cgcgatcgtaatgaccgtggcccgcgtggcgatcgtgaagaacgtccgcgtcgtgaacgt
cgtgacgttggcgatatgcagttataccgcattgaagtgggccgtgatgacggcgttgaa
gttcgtcatatcgtgggcgctatcgctaacgaaggcgacatcagcagccgttacattggc
aacattaagctgttcgcgtctcactccaccatcgagctgccgaaaggtatgccgggcgaa
gtgctccagcacttcacgcgtacccgcattctgaacaagccgatgaatatgcagctgttg
ggtgatgcggttccgcacgcgggcggcgaacgtcgcggcggtggtcgtagcttcagtggc
gaacgtcgtgaaggcggtcgtaatttcagcggcgaacgtcgtgaaggtggtcgtggtgat
ggtcgtcgcttcagcggcgaacgtcgtgaaagccgtggtccgcgtcgtgatgactctacc
ggtcgccgtcgtttcggcggtgatgcgtaa
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integrated database retrieval system
