Salmonella enterica subsp. enterica serovar Choleraesuis: SCH_3223
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Entry
SCH_3223 CDS
T00240
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase, member of mRNA degradosome
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sec
Salmonella enterica subsp. enterica serovar Choleraesuis
Pathway
sec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SCH_3223 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sec03019
]
SCH_3223 (pnp)
03016 Transfer RNA biogenesis [BR:
sec03016
]
SCH_3223 (pnp)
Enzymes [BR:
sec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SCH_3223 (pnp)
Messenger RNA biogenesis [BR:
sec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SCH_3223 (pnp)
Transfer RNA biogenesis [BR:
sec03016
]
Prokaryotic type
tRNA degradation factors
SCH_3223 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_2
KH_2
OB_RRP5_4th
aRib
S1_RRP5
KH-I_KHDC4-BBP
KH_SLS1_2
Motif
Other DBs
NCBI-ProteinID:
AAX67129
UniProt:
Q57JI3
LinkDB
All DBs
Position
complement(3405274..3407439)
Genome browser
AA seq
721 aa
AA seq
DB search
MPSKIGKDIILLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKA
KPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNE
VQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDEL
KESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPR
WDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDA
NELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQA
LVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRG
VLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK
EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGAR
LHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIE
DDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVH
ISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQA
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaaaattggaaaggatattattttgcttaatccgatcgttcgtaaattccag
tacggtcagcataccgttacgctggaaactggcatgatggcgcgtcaggccactgccgct
gttatggtaagcatggatgacaccgccgtattcgttaccgttgtcggccagaaaaaagcc
aagccaggccaggacttcttcccactgaccgttaactatcaggagcgtacctacgctgct
ggtcgtatcccgggcagcttcttccgtcgtgaaggccgtccaagcgaaggcgaaaccctg
atcgcgcgtctgattgaccgcccggttcgtccgctgttcccggaaggcttcgttaacgaa
gtgcaggttatcgcgaccgtcgtttccgttaacccgcaggttaacccggatatcgtggcg
atgatcggcgcatccgctgcgctgtcgctgtccggcattccgttcaacggcccaatcggc
gcggcgcgcgtaggttacatcaatgaccagtacgtgctgaacccgacccaggacgagctg
aaagaaagcaagctggacctggtggttgccggtaccgaagcggctgtgctgatggtggaa
tccgaagctgaactgctgagcgaagacactatgctgggcgcggtggtattcggtcacgag
cagcagcaggttgttatccaggcgatcaacgatctggtgaaagaagccggtaaaccgcgt
tgggactggcagccggaagccgtcaacgacgcgttgaacgcgcgtgttgctgcgctggct
gaatctcgtctgagcgacgcgtaccgcatcaccgataaacaagagcgctatgctcaggtt
gacgtaatcaaatccgaaaccatcgagcagcttattgcagaagatgaaactctggatgct
aacgagctgggcgaaatcctgcacgctatcgagaaaaacgtggtgcgtagccgcgtactg
gcaggcgagccgcgtattgatggccgtgaaaaagacatgatccgtggtctggacgtgcgc
actggcgtactgccgcgtactcacggttccgctctgtttacccgtggtgaaacgcaggcg
ctggttaccgcaactctgggtactgcccgtgacgcgcaggtgcttgatgaactgatgggc
gagcgtactgacagcttcctgttccactacaacttccctccgtactccgtaggcgaaacc
ggcatggtcggttctccgaagcgtcgtgaaattggtcacggtcgtctggcgaagcgcggc
gtgctggcagtgatgccggacatggataaattcccgtacaccgttcgcgtggtgtctgaa
atcaccgaatccaacggttcttcttctatggcttccgtgtgcggcgcttctctggcgctg
atggacgctggcgtgccaattaaagccgccgtagcaggtatcgctatgggtctggtgaaa
gaaggcgacaactacgttgtactgtctgacattctgggcgacgaagatcacctgggcgat
atggacttcaaagtggcgggttcccgcgacggtatctctgcgctgcagatggatatcaaa
attgaaggtatcaccaaagagatcatgcaggttgcgttgaaccaggctaaaggtgcgcgt
ctgcacatcctgggcgtgatggaacaggcgatcaacgcgccgcgcggcgatatctctgaa
tttgcgccgcgtatccataccatcaagatcagcacggacaagatcaaagacgtgatcggt
aaaggcggttctgtgatccgcgcgctgactgaagagaccggcaccaccatcgaaattgaa
gatgacggtactgtgaagatcgcggcgaccgacggtgaaaaagcgaaatacgctatccgt
cgtatcgaagagatcaccgcagagatcgaagtcggccgtatctacaatggtaaagtgacc
cgtatcgttgactttggcgcgtttgttgccatcggcggcggtaaagaaggtctggttcac
atctctcaaatcgcggataagcgtgtagagaaagtgaccgattatctgcagatgggtcag
gaagtcccggttaaggttctggaagttgaccgccagggccgtgtacgtctgagcattaaa
gaagcaaccgagcagtctcaacctgcggctgcgccggaagctccggcgagcgaacaggcc
gagtaa
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