Salmonella enterica subsp. enterica serovar Choleraesuis: SCH_3450
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Entry
SCH_3450 CDS
T00240
Symbol
rtcB
Name
(GenBank) putative cytoplasmic protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sec
Salmonella enterica subsp. enterica serovar Choleraesuis
Brite
KEGG Orthology (KO) [BR:
sec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sec03016
]
SCH_3450 (rtcB)
Enzymes [BR:
sec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
SCH_3450 (rtcB)
Transfer RNA biogenesis [BR:
sec03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
SCH_3450 (rtcB)
Prokaryotic type
tRNA splicing ligases
SCH_3450 (rtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AAX67356
UniProt:
Q57IV6
LinkDB
All DBs
Position
complement(3634864..3636081)
Genome browser
AA seq
405 aa
AA seq
DB search
MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGS
VIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLAELRSAIEAAVPHGRTTGRGRRD
VGAWGNPPANVDEKWAQLEAGYQWLTQKYPRFLNTNSYKHLGTLGTGNHFIEICLDETDR
VWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA
QQFASLNREAMMENALAALQRCVEKPIALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS
ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVDDQIRATAH
VECRKDADVIDEIPMAYKDIDAVMAAQSDLVEIMYALRQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgatgaattacgaattgatgaccacccagaacgcaccggtaaaaatgtggaccaaaggc
gtaccggtagaagacgatgcccgtcagcagctgatcaatacggcgaaaatgccgtttatt
ttcaaacatattgccgttatgccggatgtgcatttggggaaaggatcgaccatcggtagc
gtgatcccgacgaaaggggcgattattccggcggcggtgggcgtggatatcggttgtgga
atgaacgcgctgcgtaccagcttaacggcggccgatctgccggaaaatctggcggagctg
cgtagcgccatagaggccgctgtgcctcacgggcgtaccaccggacgcgggcgtcgcgat
gtgggcgcatggggaaacccgcccgccaacgttgatgaaaaatgggcgcagctggaagcg
ggatatcagtggttaacgcaaaaatatccgcgctttttgaataccaatagctataagcac
ctgggaacgttgggaaccggtaaccactttattgagatctgtctggatgaaaccgatcgg
gtatggatcatgctgcactccggttcgcgcgggatcggtaacgccatcggcacctatttt
atcggcctggcgcagcaagaaatgcaggagcagttagaaacgctgccgtcccgcgatctg
gcgtattttaatgaaggaagcgaatattttgatgattacctgaaagcggtacactgggcg
cagcaattcgccagcctgaaccgcgaggcgatgatggaaaacgcgctggcggcgctccag
cgctgcgtggaaaaaccgatcgccctcgatatggacgagatcaactgccaccataactat
gtgcaaaaagagcagcactttggcgaagagatctatgtgacgcgtaaaggggctgtttcg
gcgcggcgcggtgagttcggtatcattcccggttcgatgggggcgaaaagctttatcgtg
cgcgggctgggtaacgaagagtcgttctgttcgtgcagccacggcgccggacgtgtgatg
agccgaacgaaagcgaagaaactgtttagcgttgacgatcagattcgcgccaccgcgcat
gtcgaatgccgtaaagatgcggacgtgatcgacgagatcccaatggcgtataaagatatt
gatgcggtgatggcggcgcagtctgacctggtggaaatcatgtacgccctgcggcaggtg
gtgtgcgttaaaggatag
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