Pseudomonas aeruginosa B18: B18_26140
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Entry
B18_26140 CDS
T06681
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sech
Pseudomonas aeruginosa B18
Pathway
sech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B18_26140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sech03019
]
B18_26140
03400 DNA repair and recombination proteins [BR:
sech03400
]
B18_26140
Enzymes [BR:
sech01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B18_26140
Messenger RNA biogenesis [BR:
sech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B18_26140
DNA repair and recombination proteins [BR:
sech03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B18_26140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
Phage_rep_O
DUF2250
wHTH-PRTase_assc
Ribosomal_L18
HTH_27
Motif
Other DBs
NCBI-ProteinID:
QLD77479
LinkDB
All DBs
Position
complement(5725900..5731023)
Genome browser
AA seq
1707 aa
AA seq
DB search
MSPLPQPKGLIFDLEVVPPKNNQPARIMMVGALRPDLGAELELKVSGDPSPALQQLDALS
DGASFVLGHNVIDHDLPILREHFPGMALHALPVIDTLRLSPLAFPQNPYHRLIKDYKLIR
DSLNSPLSDCRSTLVLFLDQRQAFTQLNETNQTELLCYQALLAPSMRGDLGAFFASLTGQ
SPVSVPELRARFPQLLQETDPALQRDLKVCRARLEQLLEEDLQREDLHWPLAYALAWLRV
SGGNSVLAPWVRHQFPEVGRLISELRDMPCEREDCQYCQTTHDPRHELKRYFGFPDFRYE
GPGESLQHDIVLAGMRGQHVLAILATGGGKSLCYQLPALNRFHRNGSLTVIVSPLQSLMK
DQVDGLLERNVQCAAALNGLLTMPERAEVLEKIQMGDVGILLVSPEQFRNKAFRRAIRQR
QVGAWIFDEAHCLSKWGSDFRPDYLYVSRFIREYTGDQPLAQIGCFTATAKPDVLADIQS
HFRESLGIEFKVFPGGHERTNLHFDVLPCTKAEKWSRTDGLLREHLDVQEGGAVVFVSSR
KSAEELSDFLIGQGWPCKHFHAGLEPNTKTDIQDDFKAGQLRIIVATNAFGMGVDKADIR
LVVHADIPGSLENYLQEAGRAGRDQGDARCVLLYDPQDIETQFGMSERSKLSIRDIQQIL
RKLRNESNRRKGGKLVITAGEILLDDDVETSFSADERDAETKVVTAVAWLERGDYLKREE
NHTQIFPARLDVSEEEAEKRLLKAELPQRRLEEFKAILRFLYGADVDERVNTDQLMQLTS
LESEEVASALKQLEEMGLLVNDSQITLYVRHGVTGASSQRLSSSLELERALLQCLPEQAP
DAEHGDWQDLNLPALTAELKSATGLDELLPLHVLRLLRSLAQDHDADDQQRSSLELRQLN
RDYLKLRIKGGHSWAKIVGFGDVRRALASKFLELLVGKLPAGLRGADLLVETSFGELLQV
IEGDLELPHLIPPNRRRKVIEHVLLYLHRQDILTLNHGMTVMRRAMTIEVKKEDKRKTFL
KEDYLRLDEHYREKRIQVHVMREYAEVALKEMAEALRLVLDYFTDSKQAFIKRHFNGRED
VLKLATSEESWKSIIESLSTTQKLIVADDDDINRLVLAGPGSGKTRVIVHRIAYLLRVRR
VPATSIVALTFNRHAANEIRKRLLALVGADAYGVSVLTYHSMAMRLTGTRFERGATVDER
ALKQVLSDAVELLEGKRNIEGEDDLREQLLRGYRYILVDEYQDIDDLQYRLVSALAGRHA
EEDGRLCIMAVGDDDQNIYAWRDTNNRYIERFREDYEASTSFLVDNYRSSLRIIEAANQL
IGQNLARLKEANPIRIDRARQELPAGGLWEERDEQRKGQVMRLLIDPSDREQGNLQAQAA
MVELGRLLALEQGSWNGCAVLARTHRYLWPIQAWCEQHDIPYFLAADKETALPITRQRSF
VAAIDYLREIEGALCAADAWQRLSGSNQLVEAEWKSFFQTAFEQMRGELGDCQLGSGALI
DWLYDYARELRQQPKDGLYLGTVHSAKGLEFRHVVLLDGGWSTQVDTLADERRLYYVGMT
RAEQTLTLCEFADGNPFSRSLMRDVQQHEFQGQFLLALEVRFQQLTLKEIDIGFAGRQSP
HARIHKAIKALREGDPLMLKEEAGGYQLLDQQGNVVGRTARSFRPRIGFDQCQVAAVMVR
FTEDSEEQYRDWDKCERWEVVVPRGRG
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccacttcctcaacccaagggcctgatattcgatcttgaggtggtgccgcccaag
aacaatcaacctgcccgaatcatgatggtcggtgcccttcggcctgacttaggggcagag
ttggagctgaaggtctctggagacccgtccccagctttgcagcagctggatgcactgtcc
gacggggcgagtttcgtgctcggccacaatgtcatcgaccacgatctgcctatcttgcgc
gaacattttcccggcatggctttgcatgctctgccggtcatcgacaccctgcgtctgtcg
ccactggcgtttccacaaaacccgtatcaccggctgatcaaggattacaagcttatccgt
gacagcctcaactcgccgttgtccgactgccgctcgacgttggttctttttctggatcaa
cgccaggccttcacgcagttgaacgagaccaaccagacggaacttctctgctatcaggcg
ttgctggcgccgagtatgcggggagatctgggggctttcttcgcatccctgactgggcag
tctccggtgtctgtacccgagctccgagcgcggtttccacaattgctgcaagagacggat
ccagcccttcagcgtgacttgaaggtatgccgagcacggcttgagcaactacttgaggag
gatttacagcgggaggatctgcattggccgttggcctacgcactggcctggctccgtgta
tctggcggcaactcggtactggcgccctgggtgcgacatcagtttccagaggttgggcgg
ctaatctccgagctgcgtgatatgccgtgtgagcgcgaggattgtcagtactgtcagacg
actcatgacccacgccacgagctgaagcgctatttcggcttccccgattttcgttacgag
ggtcctggagagagtctccagcacgatatagtgctggccggcatgcgtggtcaacacgtc
ctggccatcctggcgaccggcgggggcaagtcgctgtgctatcagttgccggcgctgaac
cggtttcatcgtaacggcagccttaccgtcatcgtctcgccgctgcagtcgctgatgaag
gatcaggtcgacgggctgctggaacgtaacgtccagtgcgccgcagcgctgaatggcctg
ttgactatgccggagcgcgccgaggtactggagaaaatccagatgggcgatgtcggcatt
ttgctggtatcgcccgagcagttccgcaacaaggctttccggcgagcgatccgccagcgt
caggtcggtgcctggattttcgatgaggcgcattgcctgtcgaaatggggtagcgacttt
cggccagactacctgtatgtctcccgcttcatccgggagtacaccggtgatcaaccgctg
gcgcagattggttgttttaccgcgacggccaagcccgatgtgctcgcagatatccagagc
catttcagggaaagcctgggcattgagttcaaggtgttccccggagggcacgagcgaacc
aatctgcattttgatgtgctgccctgcaccaaggcagagaagtggtcgcgtacggatgga
ttattgcgagagcacctggacgttcaggagggcggtgcagtcgtcttcgtttccagtcgc
aagagtgctgaggagctgtccgatttcctgattggccaaggatggccttgcaagcacttt
catgccggtcttgagcccaacaccaaaacggatattcaggacgacttcaaggctgggcaa
ctgagaatcatcgtagctaccaacgccttcggaatgggcgtggacaaggctgatatccgt
ctcgtcgtgcatgccgacataccaggttcgctggagaactacctgcaggaggcgggcagg
gctgggcgtgatcagggcgatgcgcgctgtgtgctgttgtacgacccgcaggacatcgaa
acccagttcggcatgagcgagcgctcgaagctcagcatccgcgacatccagcagatcctg
cgcaagttgcgtaacgagagcaatcggcgtaagggcggcaagctggtcatcacggcgggt
gaaatcctgctggacgatgacgttgaaaccagcttctccgcggatgagcgtgatgccgaa
accaaggtcgttacggcggttgcctggctggagcgtggtgattacctcaaacgtgaggaa
aaccatacgcagattttcccggcacggctggatgtgagcgaggaagaggccgagaagcgc
ttgctgaaggccgagttgccgcaacgtcgattggaggagttcaaggctattctgcgcttt
ctctacggcgccgatgttgatgaacgggtgaataccgaccagttgatgcagttgaccagt
ctggagtcggaagaggttgccagcgcactcaagcaattggaggagatggggctgctggtc
aacgactcgcagataacgctgtatgtgcgccatggtgtgacgggggcttccagtcaacgc
ctttccagctccctggagctggaaagggctttgttgcaatgcctgccagagcaggcaccg
gacgccgagcatggcgattggcaggatttgaatctgccggcattgaccgctgaacttaag
tccgcgacagggttggatgaactgctcccgctgcatgtgctgcggctgttgcgcagcctg
gcccaagatcatgatgccgatgatcagcagcgcagtagccttgagctcaggcaactcaat
cgtgactacctcaaactgcgtatcaagggtggtcattcctgggcgaagattgttggcttt
ggtgacgtgcggcgtgcattggctagcaagttcctggaactgttggtcggtaagctaccg
gcaggattgcgtggcgcggatctgctggtcgaaacgagttttggcgaattgctccaggtg
atcgaaggtgacctcgaactgccgcatctgattccgccgaacaggcgccgtaaggtgatt
gagcatgtcctgctttatttgcatcggcaggacattttgaccctcaaccacggcatgacg
gtcatgcgtcgggccatgaccatcgaggtcaagaaggaagacaagcgtaagaccttcctc
aaggaggactacttgcgactcgacgagcactaccgcgagaagcgcattcaggttcatgtg
atgcgtgaatatgcggaagtggcgctgaaggagatggctgaggcgttgcgcctggtgctg
gactacttcaccgactccaagcaggcgtttatcaagcggcattttaatgggcgggaggac
gtgctcaagctggcgaccagcgaggagtcatggaaatcgattatcgagtcgctgagcact
actcagaaactgatagtcgccgacgatgacgacataaatcggctggtgctggctgggccg
ggctccggcaagacacgtgtgatcgtgcatcgcatcgcttacctgctgcgggtgcggcga
gtaccagcgaccagcatcgtggcgttgaccttcaaccgccacgcggcgaacgagatccgc
aagcggctgttggccttggtcggggccgatgcctacggtgtcagcgtcctgacctatcac
agcatggccatgcgcttgaccggcacccgtttcgagcgaggcgcgacggtcgacgagcga
gccctcaaacaagtattgagcgatgccgtcgagttgctggagggtaagcgcaatattgag
ggcgaggacgacctgcgcgagcagctactgcgcggctaccgttacatcttggttgatgaa
taccaggacatcgacgacctgcaataccgtctggtcagtgctctggctgggcggcacgcg
gaggaagatggtcggttgtgcatcatggcggtaggcgacgatgaccagaacatctatgcc
tggcgcgataccaataatcgttatatcgagcgcttccgcgaggactatgaggcctcgacc
agcttcctggtcgataactatcgttcttccctgcgcatcattgaggcggccaaccaactc
attggccagaatttggctcgactgaaagaggccaatcccatccggatcgacagggctcgg
caggagctgcccgctggcgggctatgggaagagcgggacgagcagcggaaaggtcaggta
atgcgactgctgatcgacccgagcgaccgtgagcagggcaacctgcaggcacaggcggcc
atggtggagttgggacggttactcgcgctagaacaggggagctggaacggctgtgcggtt
ctggctcggacgcaccgctatctgtggccgatccaggcctggtgcgagcagcacgatatt
ccttatttcctggcagcagacaaggaaacggcgttacccattactcggcagcgcagtttt
gtggctgcaatagactatctgcgagaaatagaaggcgctttgtgcgcggctgacgcatgg
cagcgtttgtcgggtagcaatcaactggtggaagccgagtggaagagttttttccagacg
gcctttgagcaaatgcgaggagagttgggcgactgccaacttggcagtggtgccttgatc
gattggctgtacgactacgcccgtgaattgcgtcaacagcccaaggacggcctctatctt
ggtaccgtgcattcggccaaaggtctggagttccgccatgtcgttctgctggatggtggc
tggagcacgcaggtcgataccctggctgatgagcgacgtttgtactacgtggggatgacg
cgagccgaacagaccctgacgttgtgcgagttcgctgacggcaatccattcagtcgcagc
ctgatgagagatgttcagcagcatgagtttcaggggcaatttcttctggcgttggaggtg
cgctttcagcaactcacgctgaaggagatcgatattggttttgccggtcgtcaatcacca
catgcccggatacacaaggccattaaggcgcttcgtgagggagatccgctgatgctgaag
gaggaggctggcggctatcaactgctcgatcagcaaggcaacgtggtagggcgaaccgcc
aggtcattccggccacggatcggcttcgatcaatgccaagtcgcagccgtcatggtgcgg
tttaccgaggatagcgaggagcagtatagggattgggacaagtgcgagcgctgggaggtg
gttgtgccgagaggacggggatag
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integrated database retrieval system
