Pseudomonas aeruginosa B18: B18_27850
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Entry
B18_27850 CDS
T06681
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sech
Pseudomonas aeruginosa B18
Pathway
sech03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sech00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B18_27850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sech03019
]
B18_27850
03009 Ribosome biogenesis [BR:
sech03009
]
B18_27850
Enzymes [BR:
sech01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B18_27850
Messenger RNA biogenesis [BR:
sech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B18_27850
Ribosome biogenesis [BR:
sech03009
]
Prokaryotic type
rRNA processing factors
B18_27850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QLD77815
LinkDB
All DBs
Position
6031492..6034710
Genome browser
AA seq
1072 aa
AA seq
DB search
MPIAVSGSPGNHWYYMKRMLINATQPEELRVALVDGQRLFDLDIESGAREQKKANIYKGR
ITRVEPSLEAAFVDFGAERHGFLPLKEISREYFKKSPEGRINIKEVLSEGQEVIVQVEKE
ERGNKGAALTTFISLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLI
VRTAGLGRSTEELQWDLDYLLQLWSAIKEASGERGAPFLIYQESNVIIRAIRDYLRQDIG
EVLIDSIDAQEEALNFIRQVMPQYASKVKLYQDSVPLFNRFQIESQIETAFQREVKLPSG
GSIVIDPTEALVSIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFI
DMTPAKNQRAVEERVREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCN
GQGIIRDVESLSLAILRLIEEEALKDRTAEVRARVPFQVAAFLLNEKRNAITKIELRTRA
RIFILPDDHLETPHFEVQRLRDDSPELVAGQTSYEMATVEHEEAQPVSSTRTLVRQEAAV
KTVAPQQPAPQHTEAPVEPAKPMPEPSLFQGLVKSLVGLFAGKDQPAAKPAETSKPAAER
QTRQDERRNGRQQNRRRDGRDGNRRDEERKPREERAERQPREERAERPNREERSERRREE
RAERPAREERQPREGREERAERTPREERQPREGREGREERSERRREERAERPAREERQPR
EGREERAERPAREERQPREDRQARDAAALEAEALPNDESLEQDEQDDTDGERPRRRSRGQ
RRRSNRRERQREVSGELEGSEATDNAAAPLNTVAAAAAAGIAVASEAVEANVEQAPATTS
EAASETTASDETDAPTSEAVETQGADSEANADETADIEAPVTVSVVRDEADQSTLLVAQV
TEEAPFASESVESREDAESAVQPATEAAEEVAAPVPVEAAAPSEPAAAEEPTPAIAAVPA
NATGRALNDPREKRRLQREAERLAREAAAAAEAAAQAAPAVEEIPAVASEEASAQEEPAA
PQAEEITQADVPSQADEAQEAVQAEPEASGEDAADTEHAKKTEESETSRPHA
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
gtgccgatcgccgtttccggtagccccggaaaccattggtactacatgaaaagaatgctg
atcaacgcgactcaacccgaggagttgcgtgttgcactggtcgacggccaacgcctgttc
gacctcgacatcgagtcgggcgcccgcgagcagaagaaggccaacatctacaaaggccgc
atcactcgcgtcgaacccagcctcgaagccgccttcgtcgacttcggcgccgaacgccac
ggcttcctccccctcaaagaaatctcccgcgaatacttcaagaagtcccccgaaggccgg
atcaacatcaaggaagtcctgagcgaaggccaggaagtcatcgtccaggtcgagaaggaa
gagcgcggcaacaagggcgccgccctgaccaccttcatcagcctggccggccgttacctg
gtgctgatgccgaacaacccgcgcgccggcggcatctcccgccgtatcgaaggcgaagag
cgcaacgagctgcgcgaggccctgaacggcctcaacgcaccggccgacatgggcctgatc
gtgcgcaccgccggcctcggccgcagcaccgaggaactgcagtgggacctcgactacctg
ctgcaactgtggagcgcgatcaaggaagcgtccggcgaacgtggcgcgcccttcctgatc
taccaggaaagcaacgtcatcatccgcgccatccgcgactacctgcgccaggacatcggc
gaagtgctgatcgacagcatcgacgcccaggaagaagccctgaacttcatccgccaggtg
atgccgcagtacgccagcaaggtgaagctgtaccaggacagcgttccgctgttcaatcgc
ttccagatcgagagccagatcgagaccgctttccagcgcgaagtgaagctgccgtccggc
ggctccatcgtcatcgacccgaccgaggccctggtttccatcgacatcaactcggcgcgc
gccaccaagggcggcgacatcgaggaaaccgccctgcagaccaacctggaagcggccgag
gaaatcgcccgccagctgcgcctgcgtgacatcggcggcctgatcgtcatcgacttcatc
gacatgaccccggcgaagaaccagcgcgccgtggaagagcgtgtccgcgaagccctcgag
gccgaccgcgcgcgcgtccaggtcggtcgcatctcgcgcttcggcctgctggaaatgtcc
cgccagcgcctgcgtccgtccctcggcgagaccagcggcatcgtctgcccgcgctgcaac
ggccagggcatcatccgcgatgtcgagtcgctgtcgctggccatcctgcgcctgatcgag
gaagaagccctgaaggaccgcaccgcggaagtccgcgcccgcgtgcccttccaggtcgcc
gccttcctgctcaacgagaagcgcaacgccatcaccaagatcgaactgcgtacccgcgcg
cgcatcttcatcctgccggacgatcatctggaaaccccgcacttcgaagtccagcgtctg
cgcgatgacagccccgaactggttgccggccagaccagctacgaaatggccaccgtcgag
cacgaagaagcccagccggtcagctcgacccgcaccctggtccgccaggaagcagcagtc
aagaccgtcgctccccagcagcccgcaccgcaacacaccgaagcaccggtcgagccggcc
aagccgatgcccgagccgagcctgttccagggcctggtgaagtccctggtcggcctgttc
gcaggcaaggatcaacctgccgccaagcctgctgaaaccagcaagccggctgccgagcgc
caaacccgccaggacgagcgtcgcaacggccgccagcagaaccgccgccgcgatggccgc
gatggcaatcgccgcgacgaagagcgcaagccccgcgaggaacgcgcagaacgtcaaccg
cgcgaagagcgcgccgaacgcccgaatcgcgaagagcgcagcgaacgccgccgcgaagag
cgcgccgagcgcccggctcgcgaggagcgccagccgcgcgaaggccgtgaagagcgcgcc
gagcggacgccccgcgaagaacgccagccgcgcgaaggccgcgaaggtcgcgaggaacgc
agcgaacgccgccgcgaagagcgcgccgaacgcccggctcgcgaagagcgccaaccccgc
gaaggccgtgaagaacgcgccgagcgcccggcccgcgaagagcgccagccgcgcgaggat
cgccaggctcgcgacgccgcggccctggaagccgaggcgctgccgaacgacgagagcctg
gagcaggacgagcaggacgataccgatggcgagcgcccgcgccgccgctcccgcggccag
cgtcgtcgcagcaaccgccgcgaacgccagcgcgaggtcagcggcgagctggaaggcagc
gaggcgaccgataacgccgccgcgccgctgaacactgtcgcagccgccgctgctgccggt
atcgctgtcgccagcgaagccgtagaagcaaacgtggagcaagccccggccactaccagc
gaggctgccagcgaaaccacggcaagcgatgaaaccgacgcaccgaccagcgaagccgtg
gaaacccagggcgcggacagcgaggccaatgccgacgaaaccgccgacatcgaagcgccg
gtgaccgtcagcgtggtccgggacgaagccgaccagagcaccctgctggtcgcgcaagtc
actgaagaagctcccttcgccagcgaaagcgtggaaagccgcgaagacgccgagagcgcc
gtgcaaccggcaacggaagcggccgaagaagttgccgctccggtgcccgtcgaagcagca
gcccctagcgagcccgcagccgccgaggagccgaccccggccatcgcggcggtgccggcc
aacgcgactggccgtgccctcaacgacccacgggaaaaacgtcgcctgcaacgcgaagcc
gagcgtctggcacgcgaagccgcagcagcagccgaagcggcagctcaggccgctcccgcc
gtcgaggagatcccggctgtagcgagcgaggaagcgtcggcccaggaggaacctgctgca
ccccaggctgaagaaatcacccaggccgacgttccgtcccaggcggacgaagcccaggaa
gcggtacaggccgagcctgaagcttccggcgaagacgccgccgacacggagcacgcgaaa
aagaccgaggaaagcgaaacctcgcgcccgcatgcctga
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