Pseudomonas aeruginosa B18: B18_29475
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Entry
B18_29475 CDS
T06681
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sech
Pseudomonas aeruginosa B18
Brite
KEGG Orthology (KO) [BR:
sech00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sech03019
]
B18_29475
Enzymes [BR:
sech01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
B18_29475
Messenger RNA biogenesis [BR:
sech03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
B18_29475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
NACHT
AAA_25
nSTAND_NTPase5
ABC_tran
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QLD78129
LinkDB
All DBs
Position
complement(6380263..6384243)
Genome browser
AA seq
1326 aa
AA seq
DB search
MTDQTPSLDQLVRRLDQAQISDRHRLRRQLHELRKQPDDARLAQWVERFQTSCAKVEARR
ASVPVIRYDDSLPIAAKRDEIKAAIAAHQVVVIAGETGSGKTTQLPKICLELGRGIHGLI
GHTQPRRLAARSVATRVAEEIGTPLGALVGYQVRFEDQSDDSTLVKLMTDGILLAETQHD
RYLERYDTLIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSRHFDGAP
VIEVSGRTYPVETWYRPLAAETDEEGNRVEDDLSVDQGILAALDEIAAHEREVGKRPGDV
LVFLPGEREIRDAAEMLRKANLRHTEVLPLYARLTPAEQQKIFQPRPGRKIVLSTNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYS
EEDFNARPAFTDPEILRTNLAAVILQMLHLRLGDIEAFPFIEPPDGKAIKDGFTLLQELS
AVNREGQLTPLGRQLARLPIDPRLGRMLLEAAQQGSLEEVLTVASALSVQDPRERPVERQ
QAADQAHAQWKDPDSDFAALINLWRGFEEQRQALGSNALRSWCRKNFLNYLRLREWRDAH
RQLTLICRELKLPFGRPAKAEARKPEAKKGASADNEREVPGIDYAAVHKAILSGLLSQIG
QKAEEGDYLGARQRRFWIHPSSGIARKRPQWIMAAELVETTKLFARMVAKIEPDWLEPLA
GHLIKTNHFEPHWEKRRGQVVAFEQVTLYGLIVIGRRPVHYGPIDPPVARELFIREGLVR
GEINSRAKCLSANRQLLEKLDELEAKARRRDILADEETLFAYYDARLPADIYQTASFEKW
YARERQNQPDLLLMREEDVLAREASEVTAAQYPDRLRLGDLHLSLSYQFEPGTARDGVTV
RVPAPLLPQLPAERIDWLVPGLLYDKAVALVRNLPKAIRKSFVPVPDFVRAALERITFGE
GSLPQVLGRELQRMTGVRVADEAWAEAATQLDDHLRMNIEVVDAQGKFLGEGRDLAELTA
RFAEASQAALAIPQADKEQQRPVEAKAFASVAEKAQQKVAGLSMTVYPALVEEQGEVKEG
RFPTQAEADYQHRRALQRLLLQQLAEPAKYLRAKLPGQTEMGLLYRELGRVEALVEDILL
ASLDSCVLQGESLPRDGAALAALAERKRAAWNEHAERLARLVLDILKLWHGLQKRFKGKV
ELAMTVPLNDVKGQLANLVYPGFVRATPLEWLKEYPRYLKAIEQRLDKVAGQVQRDRVWS
GELGELWAQYQARLAKHAQEGKRDAELQVYRWMLEEYRVSLFAQQLGTRLPVSDKRLAKQ
WSQVEG
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccagactccttcccttgaccaactcgtccggcgcctcgaccaggcccagatc
agcgaccgccaccgcttgcgccggcagctccacgaactgcgcaagcagcccgacgacgcg
cgcctggcgcagtgggtcgagcgcttccagacctcctgcgccaaggtcgaggcgcggcgc
gccagcgttccggtgatccgctacgacgacagcctgccgatcgccgccaagcgcgacgag
atcaaggccgctatcgccgcccaccaggtggtggtgatcgccggcgagaccggctcgggc
aagaccacccagttgccgaagatctgtctggagctgggtcgcggcatccacggcctgatc
ggccatacccagccgcgtcggctggcggcgcgcagcgtggcgacgcgggtcgcggaagag
atcggtacgccgctgggcgcgctggtcggctaccaggtgcgcttcgaggaccagagcgac
gacagcaccctggtcaagctgatgaccgacggcatcctcctggccgagacccagcacgac
cgctacctggagcgctacgacacgctgatcgtcgacgaagcccacgagcgcagcctgaac
atcgacttcctcctcggctacctgaagaccctgttgcaccggcgtccggacctgaagctg
atcatcacctcggcgaccatcgacctggagcgtttctcccggcatttcgacggcgccccg
gtgatcgaggtttccggccgcacctatccggtggagacctggtaccggccgctggcggcg
gaaaccgacgaggagggcaaccgggtcgaggacgacctgtcggtggaccagggcatcctc
gccgccctcgacgagatcgccgcccacgaacgcgaggtcggcaagcggcccggcgacgtg
ctggtgttcctccccggcgagcgggagatccgcgacgccgcggagatgctgcgcaaggcc
aacctgcgccacaccgaggtgctgccgctgtacgcgcgactgaccccggccgagcagcag
aagatcttccagccgcgcccgggacgcaagatcgtgctgtccaccaacgtcgcggaaacc
tcgctgacggtgccgggcatccgttacgtgatcgacagcggcaccgcgcggatcagccgc
tacagctaccgcgccaaggtccagcggctgcccatcgaggcggtgtcgcaggccagcgcc
aaccagcgcaagggccgttgcggacgggtcgagccgggcatatgcgtgcgcctctacagc
gaggaggacttcaacgcgcgtccggccttcaccgacccggaaatcctccgcaccaacctg
gccgcggtgatcctgcagatgctgcacctgcgcctcggcgacatcgaggcgttccccttc
atcgagccgccggacggcaaggcgatcaaggacggcttcacccttctgcaggaactgtcg
gcggtcaaccgcgaaggccagctgaccccgctggggcgccaactggcgcgcctgccgatc
gacccgaggctgggccgcatgctgctggaggcggcccagcagggtagcctcgaggaagtg
ttgacggtggccagcgcgctgtccgtgcaggacccgcgcgagcgtccggtggagcggcag
caggccgccgaccaggcgcacgcgcaatggaaggacccggattccgacttcgccgcgctg
atcaatctctggcgtggcttcgaggagcagcgccaggcgctgggttccaatgccctgcgc
agctggtgccggaagaacttcctcaactacctgcgcctgcgtgagtggcgcgacgcccac
cgccaactgaccctgatctgccgcgaactgaagctgccgttcgggcgtccggccaaggcc
gaggcgcgcaagccggaggcgaagaaaggcgcgtcggccgacaacgaacgcgaggtaccg
gggatcgattacgcggcggtccacaaagcgatcctgtccggcctgctcagccagatcggg
cagaaggccgaggaaggcgactacctcggcgctcgccagcgacgtttctggatccatccg
tccagcggcatcgctcgcaagcgcccgcaatggatcatggccgcggaactggtggagacc
accaagctgttcgcccgaatggtcgcgaagatcgagccggactggctggagccgctggct
gggcacctgatcaagaccaaccacttcgagccgcactgggagaagcgtcgcggccaggtg
gtggcgttcgagcaggtcaccctctacggcctcatcgtcatcggtcgacgtccggtgcac
tacggtccgatcgacccgccggtggcgcgcgagctgttcatccgcgaaggcctggtgcgc
ggtgagatcaacagccgcgccaagtgcctgagcgccaaccggcagttgctggaaaagctc
gacgagctggaagccaaggcacgccggcgcgacatcctggctgacgaggaaaccctgttc
gcctattacgacgcgcgcctgccggcggacatctaccagaccgccagtttcgagaaatgg
tacgcccgcgagcggcagaatcagccggacctgctgctgatgcgcgaggaagacgtgctg
gcccgcgaagccagcgaagtcactgcggcgcagtacccggatcgcctgcgcctgggcgac
ctgcacctgtcgctgagctaccagttcgagcccggcaccgcgcgcgacggcgtcaccgtg
cgggtaccggcgccgctgctgccgcaattgccggccgaacgcatcgactggctggtgccc
ggcctgctctacgacaaggcggtggcgctggtgcgcaacctgccgaaggcgatccgcaag
agcttcgtgccggtaccggacttcgtccgcgccgccctggagcgcatcaccttcggcgaa
ggttcgctgccgcaggtgctgggccgcgagcttcagcgcatgaccggcgtgcgggtagcc
gacgaggcctgggccgaggcggcgacgcagttggacgatcacctgcggatgaacattgag
gtggtcgacgcccagggcaagttcctcggcgagggccgcgacctggccgaactcaccgcg
cgtttcgccgaagccagccaggcggccctggcgataccccaggccgacaaggaacagcag
cgtccggtggaggccaaggccttcgccagcgtcgccgagaaggcccagcagaaggtcgcc
ggattgtcgatgacggtatacccggcgctggtggaggagcagggcgaggtcaaggaaggg
cgcttcccgacccaggccgaggccgactaccaacaccgccgcgccctgcaacgactgctg
ttgcagcaactggccgagccggccaagtacctgcgcgccaagctgccggggcagaccgag
atgggcctgctgtaccgcgagctgggacgggtcgaggcgctggtcgaggacatcctcctg
gccagtctcgacagttgcgtgctgcagggcgaaagcctgccgcgcgacggcgccgccctg
gccgcgctggccgagcgcaagcgcgctgcctggaacgagcacgccgagcgcctggcacgc
ctggtgctggatatcctcaagctctggcacggcctgcagaagcgcttcaagggcaaggtc
gagctggccatgaccgtgccgctgaacgacgtcaagggccaactggccaacctggtgtat
ccggggttcgtccgcgccaccccgctggagtggttgaaggagtatccgcgttacctcaag
gccatcgagcagcgcctggacaaggtcgccggccaggtccagcgcgaccgggtgtggagc
ggcgagctgggcgaactctgggcgcaataccaggcgcgcctcgccaagcacgcccaggaa
ggcaagcgcgacgccgagttgcaggtgtatcgctggatgctggaggagtaccgggtctcg
ctgttcgcccagcaactgggaacccggctgccggtctcggacaagcgcctggccaagcag
tggagccaggtcgagggctag
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integrated database retrieval system
