Staphylococcus edaphicus: MNY58_04285
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Entry
MNY58_04285 CDS
T09108
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
seda
Staphylococcus edaphicus
Pathway
seda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNY58_04285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seda03019
]
MNY58_04285
03009 Ribosome biogenesis [BR:
seda03009
]
MNY58_04285
Enzymes [BR:
seda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MNY58_04285
Messenger RNA biogenesis [BR:
seda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNY58_04285
Ribosome biogenesis [BR:
seda03009
]
Prokaryotic type
rRNA helicases
MNY58_04285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_30
CMS1
Flavi_DEAD
GRP
UBA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UQW82326
LinkDB
All DBs
Position
931901..933424
Genome browser
AA seq
507 aa
AA seq
DB search
MQNFKELGISDKMAETLQSMGFDEATPIQKESIPLALEGKDVLGQAQTGTGKTGAFGIPL
IEKVADQEGVQSLILAPTRELAMQVAESLKAFAKGQNVQVVTVFGGMPIDRQIKSLKKGP
QIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMKFIMDKIPAEQRQTML
FSATMPKAIQTLVQQFMKSPVIVKTMNNEMSDPQIEEYYTIVKELEKFDTFTSFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQLDILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKKGVAITFVNPIEMDYIRQIEQANK
RQMTALRPPHRKEVLKARENDIKGKVQNWMSRENEPRLQRFATELLDEYNDVDLIASLLQ
ELVESNDEVDVQLTFEKPLSRGKGRQGKGGPKRGGGNHKRGGGKFDNKNRRSGKGGFNNK
KKNERPSSDRNNNKKSMKGRTFADHKK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaattagggatctcagataagatggcagaaaccctacaatccatg
gggttcgatgaggccactcctattcaaaaagagagtatccctcttgccttagaaggcaaa
gatgttcttggccaagcgcaaacaggaacaggtaaaacaggtgcgtttggtatcccatta
attgaaaaagtggctgaccaagaaggcgtacaatcattaatacttgcgccaacaagagaa
ttggcaatgcaagttgctgagtcattaaaagcattcgctaaaggtcaaaacgtacaagtt
gttacagtatttggtggtatgccaatagatcgccaaattaaatcattgaaaaaaggccct
caaattgttgttggtacgcctggtcgtgtaattgatcacttgaaccgtcgtactttaaaa
acaaatgacatccatacgcttatcttagatgaggcggatgaaatgatgaacatgggattc
atcgatgatatgaaattcatcatggacaaaataccagctgaacaacgtcagactatgttg
ttctcagctacaatgcctaaagcaattcaaacattggttcaacaattcatgaaatcacct
gtcattgttaaaacaatgaataatgaaatgtcagatccgcaaatcgaagaatattacaca
atcgtaaaagaattagaaaaattcgatacttttacaagtttcttagatgtacatcaacca
gaattagcgattgtattcggccgtacaaaacgtcgtgtagatgagttaacgagtgcgtta
atctctaaaggatataaagctgaaggattacatggtgatatcacccaagcgaaacgttta
gaagtattgaaaaaattcaagaacgatcaactagatattctagttgcaacagacgttgca
gcaagaggacttgatatttcaggtgtaagccatgtatataactttgatatcccacaagat
actgaaagctatacacatagaataggacgtacaggacgtgctggtaaaaaaggtgtggcg
attacatttgttaatccgatcgaaatggattatattcgtcagattgaacaagcgaataaa
cgtcaaatgacagctctaagaccaccgcatcgtaaagaagtgttaaaagcacgtgaaaac
gatattaaaggtaaagtgcaaaactggatgtctagagaaaacgaaccaagattacaacgt
ttcgctacggaattacttgatgaatataatgatgtagatttaattgcttcattattacaa
gagttagttgaatcaaacgacgaagttgatgttcaattaacatttgaaaaaccattatct
cgtggcaaaggtcgtcaaggtaaaggtggaccaaaacgcggtggtggcaaccataagcgt
ggcggtggcaagtttgataataaaaatcgtcgttcaggtaaaggcggattcaacaacaag
aagaaaaatgaaagaccttcttctgatagaaacaataacaaaaagtcaatgaaaggtcgc
actttcgcagaccataaaaaataa
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