Staphylococcus edaphicus: MNY58_07105
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Entry
MNY58_07105 CDS
T09108
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
seda
Staphylococcus edaphicus
Pathway
seda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
seda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MNY58_07105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
seda03019
]
MNY58_07105
03400 DNA repair and recombination proteins [BR:
seda03400
]
MNY58_07105
Enzymes [BR:
seda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MNY58_07105
Messenger RNA biogenesis [BR:
seda03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MNY58_07105
DNA repair and recombination proteins [BR:
seda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MNY58_07105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
TrbI_Ftype
Motif
Other DBs
NCBI-ProteinID:
UQW80381
LinkDB
All DBs
Position
1456807..1458186
Genome browser
AA seq
459 aa
AA seq
DB search
MLDETLKNRFGFETFKPGQKEIIEHVLNQTDTLGILPTGSGKSLCYQLPTYIKEQPTLII
SPLISLMDDQVMQLKRHGEHHVACIHSGMDETERTQNAKQLANSRFIFLSPEFLLQPHNF
KLVKSLDLGMIVLDEAHCLSEWGYDFRPHYALIGKIVNHFQNATILALTATAPSYLSYDL
KQILNKSFYVVKTTMNRDNISLSHKNFADDEEKLKWLLPTLEHAGPTIIYVSSKKMCLTL
AQKIYSYGFLTGIYHGDLSYQERHTVQHQFLNNEIPIIVATSAFGMGINKKDIRTIVHFH
LSTSPSNYMQEIGRAGRDGEQSQAISLYQPDDNFLLETLLFTDIVTIEDVESFELGQFLP
PEKSEVLEILYGHYTYQQLRTIFEISYKRKRLGYMRMLGYKNLDQCRRAYMIEFFEEKLS
EKPKQCCDNDSEINKINILNRKKVKRKMDFNEKLQNLFK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgcttgatgaaacattaaaaaatagatttggttttgaaacttttaaaccaggtcaaaaa
gaaattatagaacatgtgctcaaccagacagatacattgggcatcctaccaacaggaagt
ggtaaaagcctatgctatcaattacctacatatataaaagaacaaccaactctcatcatt
tcaccattaatctctttaatggatgatcaggtaatgcaacttaaacgccatggcgaacac
catgtagcttgtatacactctggtatggatgaaactgagcgaacccaaaatgcaaaacaa
ttagcaaatagtcgctttattttcttaagtcctgaatttctacttcaacctcataatttt
aaattagttaaatcattagatttaggtatgattgtattagacgaagcacattgtctttca
gaatggggttatgatttccgacctcattatgcattaattggcaaaatcgtcaatcatttt
caaaatgctacgatactagctttaacagctacagcaccctcatatctatcatatgattta
aaacaaatattaaataaatccttttacgtcgttaagacgacaatgaatcgcgataatatc
tcgttatcacataaaaattttgcagacgatgaggaaaaattaaaatggttattaccaaca
ttggaacatgcgggtcctacaatcatatatgtatcatctaaaaagatgtgtttaacatta
gcacaaaaaatttatagttatggttttttaactgggatttatcatggtgatttgtcatat
caagaacgtcatacagtacaacatcagtttttaaacaatgaaatacctattatcgttgca
acaagtgcatttggtatgggaattaataaaaaagacatccgtactatagttcattttcat
ttatctacaagtccttcaaattatatgcaagaaatagggcgtgctggtcgtgatggtgag
caaagccaagcaatcagtctataccagcctgatgacaactttttattagaaacattgtta
tttaccgatattgtcacaatagaagatgttgaatcatttgaacttggccagtttctaccg
ccggaaaaatcggaagttttagaaatactttatggtcattatacttatcaacaattgcgt
actatttttgagatatcatacaagcgtaaacgtttgggttatatgcgtatgttaggatat
aaaaatctcgatcaatgtcgtagagcatatatgatagaattttttgaagaaaagttaagt
gaaaagccaaaacaatgttgtgataatgactccgaaattaataaaataaatatattaaac
agaaaaaaagttaaaagaaaaatggattttaatgaaaaattacaaaatttatttaaataa
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