Staphylococcus edaphicus: MNY58_12195
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Entry
MNY58_12195 CDS
T09108
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
seda
Staphylococcus edaphicus
Pathway
seda03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
seda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MNY58_12195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
seda03400
]
MNY58_12195 (mfd)
Enzymes [BR:
seda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MNY58_12195 (mfd)
DNA repair and recombination proteins [BR:
seda03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MNY58_12195 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
Glyco_hydro_115
RecG_dom3_C
UB2H
IstB_IS21
AAA_22
DUF1421
Motif
Other DBs
NCBI-ProteinID:
UQW81309
LinkDB
All DBs
Position
complement(2489616..2493128)
Genome browser
AA seq
1170 aa
AA seq
DB search
MKSIITEYINEDKRYQELNEVFGKENVLVTGLSGAAKATIIAEKYLDSTKQLLVVTNNLY
QADKLESDLLQFVNAEAIYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAQEERGLFIVP
LNGLKKWLTPVEMWKSHQLTLSVGDDVDIDALLKKLVNMGYRRESVVSHIGEFSLRGGIV
DIYPLIGKPVRIEFFDTEVDSIRDFDVESQRSEGNIEQVNITTASDYIITEDVLKHTKQK
LKEAYEDTRPKIEKSVRNELKETYESFQLFESEMFDHQVLRRLVAFMYEQPATIVDYFKD
DAIIAVDEFNRIKETESTLVSETDEFMQNLIESGKGFIEQSFLQYDAFENLLKPFAVTYF
TLFTATMPVQLNEIIKFSCKPVQQFYGQYDIMRSEFQRFMQNDYTVVVLAETETKKERIQ
AMLNEMHIPTFIDTPSHRNEGGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPK
QQKTLTNAEKIKSYQDLKVGDYVVHVHHGVGKYLGVETLEVGGVHKDYIKLQYKGTDQLF
VPVDQMDQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDMADELIELYKAREMSVG
YQFGPDTAEQNEFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVR
AAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPIEVQLISRFRSTKEVKETKEGLK
SGFVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIP
RTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQ
SIYEKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNA
NTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELG
SGFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGVKDEKQDAPEIE
IELNIDAYLPAEYIPNEQAKIEIYKKLRKIESEAQLLDVKDELIDRFNDYPVEVERLLEM
MEIKVHALHAGVTLIKDTGKKVEVYLSEKGTTDINGEALFKQTQPLGRTMKVGVQEGKMK
VTLNKTGNWLDSLKFLTKSLEESMVIPDEI
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
gtgaaatcaataattacagagtatataaacgaagacaaacgataccaagaattaaacgaa
gtgttcggtaaagaaaatgtgttagtaacgggactatccggagcggcaaaagcgacaatc
attgctgaaaaatatttggatagtactaaacaattgctcgttgttacaaacaatctttat
caagcagataagttagaaagtgatttactgcaatttgtaaatgctgaagctatttataaa
tatcccatgcaggatattatgacagaagaattttcaacacaaagccctcaattcatgagt
gaacgcgtgcgtacgctaacggcacttgctcaagaagagagagggttattcatcgtacct
ttaaatggtttgaaaaaatggctcacaccggtagaaatgtggaagtctcaccaattgacg
ctatctgttggtgatgatgtagatattgatgcattgttaaaaaaacttgtgaatatgggc
tatcgtagagaaagcgtggtatcacatattggtgaattttcattacgtggtgggattgta
gacatctaccctttaattggaaagccagtgcgaattgaattttttgatacagaagtagat
tcaattcgtgatttcgatgtagaatcacaacgttctgaagggaacattgaacaagttaat
ataacaactgcaagtgattatattattacagaagatgtgttgaagcatacaaaacaaaaa
ctaaaagaggcttatgaagatacacgtccaaaaattgaaaaatctgtaagaaatgaattg
aaagaaacgtacgagagttttcaattatttgaatcagaaatgtttgatcatcaagtatta
cgtagactcgttgcgttcatgtatgaacagccagcaaccattgtggattactttaaagat
gacgccatcatagctgtagatgaatttaatagaattaaagaaactgaaagtacactagta
tctgaaacagacgaattcatgcaaaatttaatagaaagcgggaaaggttttatagaacaa
agttttttacaatatgatgcctttgaaaatttattgaaaccttttgctgtaacgtatttt
acattgtttactgcaacgatgcctgtgcaattaaatgaaataattaaattttcatgtaaa
ccagttcaacagttttatggtcaatatgatattatgcgttctgaattccaaagattcatg
caaaatgattatacagttgtcgtactggctgaaacagaaacaaaaaaagaacgcattcaa
gctatgttaaatgaaatgcatataccgacatttattgatacaccaagtcatcgtaatgaa
ggcggtagcgccatcattacagaaggtagtttatcagaaggctttgagttgccttatatg
cagttagttgtagtaacagaacgagaattatttaaatctaagcaaaagaaaaaaccaaaa
caacaaaaaacattaacgaatgctgaaaaaatcaaatcatatcaagatttaaaagttggc
gattatgtcgttcatgttcatcacggtgttggtaaatatctaggtgttgaaacattagaa
gtaggcggcgtacacaaagattatattaaattgcaatataaagggacagaccagttgttt
gtccctgtcgatcagatggatcaagtccaaaaatatgtcgcgtcagaagataaatcacct
aagttgaataaacttggcggtacagaatggaaaaaaacgaaagccaaagtacaacaaagt
gttgaggatatggctgatgaattgatagaactgtataaagcacgggaaatgtctgttggc
tatcaatttggacctgatacggcggaacaaaatgaatttgaaattgatttcccttacgaa
cttacaccagaccaaagtaagtctatagaagaaatcaaacaagatatggaaattgaacgt
ccaatggatagattgctatgtggagacgtaggttatggtaagacggaggtcgctgtgcgt
gcagcatttaaagctgttatggaagggaagcaagttgcctttcttgtaccaactacgata
cttgcccaacagcactatgaaacattaattgaacgtatgcaagatttccctatagaagta
caacttataagtcgatttagaagtaccaaagaagtaaaggaaactaaggaagggttgaaa
tcaggattcgttgatattgttgtaggtacacacaaattgttaggtaaagatattcattat
aaagacttagggttgctcattgtggatgaagagcaacgttttggtgtacgtcataaagaa
cgtattaaatctttaaagaacaatgtagatgtactcacattaactgcaacacctatacca
cgtacattacacatgagtatgttaggtgtcagagatttatcagtgatagaaacgccgcct
gagaaccgttttcctgtgcaaacttatgtcctagagcagaatactaattttataaaagaa
gcattggaacgagaactatcaagagatggtcaagtattctatctttataataaggtgcaa
tctatttatgagaaaagagaacaattacagatgcttatgccggatgcaaatatcggtgtc
gcacacggccaaatgaatgaacgagatttagaagaaacgatgcttagctttattaatcat
gaatacgatattattgttactacaacgattattgaaactggcgtcgatgtacccaatgcg
aatacattgatcattgaagatgcagaccgctttggactaagtcagctgtaccagttaaga
ggacgtgtaggtcggtcgagtcgaattggttatgcttatttcttacatcctacgaacaaa
gtgttatctgaaactgcagaagaccgcttgcaagccataaaagaatttaccgaattaggt
tcaggttttaaaatagctatgcgagatttgaatattcgtggtgcaggtaatttattaggt
aaacaacaacatggctttatcgactctgtcggtttcgatttatattctcaaatgttggaa
gaggctgttaatgaaaaacgcggtgtgaaagatgaaaaacaagatgcacctgaaattgaa
atagaacttaatatcgatgcttatttaccagctgaatacattcctaatgaacaggctaaa
attgaaatctacaaaaaattgcgtaaaattgaaagtgaagcacaattactggatgttaaa
gatgagttgattgatcgtttcaatgattatccagtagaagtagaaagattattagaaatg
atggagattaaagttcatgcattacatgctggcgtaacattaatcaaagataccggtaaa
aaggtagaagtttatttatcagaaaaaggaacgactgacatcaatggcgaagctttattt
aaacaaacgcaaccattaggacgcactatgaaagtaggtgttcaagaaggtaaaatgaaa
gtgacattaaataaaactggcaactggttagacagcctgaaattcttaacaaaaagctta
gaagaaagcatggttatacctgatgaaatctaa
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