Parasedimentitalea marina: EBB79_10150
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Entry
EBB79_10150 CDS
T05780
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sedi
Parasedimentitalea marina
Pathway
sedi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sedi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EBB79_10150 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sedi03400
]
EBB79_10150 (mfd)
Enzymes [BR:
sedi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EBB79_10150 (mfd)
DNA repair and recombination proteins [BR:
sedi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EBB79_10150 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
UB2H
SecA_DEAD
AAA_16
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AZV78201
UniProt:
A0A3T0N2H4
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All DBs
Position
2059678..2063136
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AA seq
1152 aa
AA seq
DB search
MAQRMMTMGGAPEGFDARLVLNEVQKSGGPVLHVARDDKRMEAMRAALAFYSPDMPVIIF
PGWDCLPYDRVSPNADIAAARMATLAALVHQMPKAFVLLTTLNAATQRVPGRDVLQEAAF
SAQVDRRIDEKALRNFLVRMGYTQSPTVMEPGDYAIRGGIIDVFPPGESGPIRLDLFGDV
LDGARRFDPASQRTIEKLDLVELAPVSEVILDETAITRFRQNYRIEFGAAGTDDPLYEAV
SAGRKHQGIEHWLPFFHAKLETLFDFLPQATITLDHQVTPARLARWDTIEDQFENRKIAM
QAKGRIDTVYKPTPPGLLYLDDTAWEQAVGAHRVIQLHPLPQANGPGVVDAGGRIGRNFA
PERQMESVSLFSSLSDHIKVKLQDGPVVVASYSEGARERLTGLIEDEGLSEVISISNGTR
LGKSGLYLAVWALEHGFVTPDMTVISEQDVLGDRLIRAPRKRRKAENFLTETQSLGAGDL
VVHVDHGIGRFLGLEVITAAGAAHECILLQYAEDARLYLPVENIELLSKYGHDEGLLDRL
GGGAWQAKKAKLKERIREMADRLIRVAAERALRKAPVLDLPPGSWDTFSARFPYQETDDQ
LRAIGEVIDDLTSGQPMDRLICGDVGFGKTEVAMRAAFVAAMSGVQVAIVAPTTLLARQH
YASFAERFRGFPLEVRQLSRFVSAKDAQSTRDGMARGTVDIVIGTHALLAKNIRFRDLGL
LIIDEEQHFGVGHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRLA
IRTYVSEFDTVTIREALLREHYRGGQSFYVVPRVSDLPDIEAFLKEQMPELTYVIAHGQL
AAGDLDERMNAFYDGKYDLLLATTIVESGLDIPTANTMVVHRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRAKLTAAAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLQEAIAKIQSGEMEGLSEADDQWAPQINLGVPVLIPEAFVPDLDVRL
GLYRRLSSLTSKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFASPTGLVEFIQSQDGLAKVKDNKIVVRRDWRSDGDKIKGAFAIARELAEK
VVAAKKKTKKSA
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcgtatgatgaccatgggcggtgcgcctgaggggtttgacgcccgtcttgtc
ctcaacgaggtgcaaaagtcgggtggaccggttctgcatgtggcacgtgatgacaaacgc
atggaggcgatgcgggcggcgctggcattttatagccccgacatgccagtcattatcttt
cctggctgggattgtttaccctatgaccgagtgtcgcccaatgctgatatcgccgctgcg
cggatggcgacgctggcggcactggtacaccaaatgcccaaagcctttgtgttgctcacc
accttgaatgcggcgacccaacgtgtaccgggacgagatgtactacaagaggccgctttt
tcggcacaggtagaccgacgcattgacgaaaaagcacttcgtaattttctggtcagaatg
ggctatacccaaagcccaacagtgatggaaccgggtgactatgcgatccggggaggcatc
atcgatgtctttcctcctggagaaagcggccccataaggttggatctgtttggcgatgtg
ttggacggcgcgcggcggtttgacccggctagccaacggaccatcgaaaaactggacctg
gtcgaattggcgcctgtgtccgaagttattctggacgagaccgcgatcacgcggttcagg
cagaattaccgcatagaattcggagctgccggcaccgatgatccgctttacgaagcggta
agtgcaggccgcaaacatcagggcatcgaacattggctgccgttctttcatgccaaactt
gaaacgctgtttgattttctgccccaagcgacaataactctagatcaccaggtgactcct
gccaggttggcacgctgggacacaatcgaagaccagtttgagaaccgcaagattgcgatg
caggccaaaggtcggatcgatacggtatataagccaacaccacccggtttattatatctg
gacgatacggcttgggagcaggccgtaggtgcgcatcgtgtaatccagctgcacccgtta
ccgcaggccaatggtcctggggtggttgatgctggcggccgtatcggacgcaatttcgcg
cctgagcggcaaatggaaagtgttagccttttcagctcactgtctgatcatattaaagtt
aaactgcaagatggaccggtggttgtcgcttcttattcagaaggcgcgcgcgaacgattg
acggggctgatagaagacgaaggcctcagcgaagttatttcgatatcaaatggcacccgg
cttggaaaatcggggctgtatctggccgtatgggccttggaacatgggttcgtcaccccg
gacatgaccgttatttccgagcaggacgtgctgggtgatcgattgatccgggcgccacgc
aaacgccgcaaagctgaaaacttcctgaccgaaacccaatctcttggtgcaggggatttg
gtggtgcatgttgatcacggcatcggccgcttccttgggttagaggtcatcacagcggct
ggcgctgcacatgaatgcattctgttgcaatatgccgaggacgcacgactgtatttgccg
gtcgaaaacatcgaacttctgtcgaaatatggtcacgatgaaggcctgttggatcggctg
ggcggcggtgcctggcaggccaagaaagccaaactgaaagagcgcatccgtgagatggct
gacaggttgatccgcgttgctgccgagcgagcattgcgtaaggcaccagttctggatcta
cctccgggcagttgggatactttttcggcgcgcttcccttatcaggaaaccgacgatcag
ttgcgggccataggcgaagtcatcgacgatttgacttcgggccagccaatggatcgattg
atctgtggggatgtcggatttggtaagactgaggtggctatgcgagctgcctttgttgct
gcaatgtccggtgtgcaggtcgctattgttgctccaaccactttgctggcgcgacagcac
tatgccagctttgccgaacggtttcgtggttttccgctggaagtcaggcaattgtctcgc
tttgttagtgcaaaggatgcacaaagcacacgagatgggatggcacgaggcactgtggat
attgtcatcggcacgcatgctttgctggcaaaaaacatacggttcagggacttgggcctg
ttgatcattgacgaagagcagcattttggtgtgggtcacaaagaacgcctgaaacaaatg
cgcactgacattcacgtgctaacactgacggcgacgccaatcccacgtaccttgcagctc
tccctgtcaggggtgcgggatctgtctatcattggcacccctccagtggaccgcctggcg
atccgcacctatgtcagcgaattcgataccgtcaccattcgcgaagcactactgcgggaa
cattatcgcggtgggcaaagtttctacgtggttcccagagtcagcgatctgccggatatc
gaggcctttctcaaagaacaaatgcccgaactgacctatgtgattgcccatggccaattg
gcggccggtgacttggatgagcgcatgaatgcgttttacgacgggaaatacgacctgctg
ctggccaccacaattgttgaaagcggtctggatattccaacggcgaatacgatggtggtg
caccgggcggatatgttcgggctgtcgcaactgtaccagatccgtggccgggtgggacgt
tccaaaacccgcgcctatgcctatttgacaaccaaaccccgcgccaagttgactgctgcc
gccgagaaacgactgcgggttttggggtcgctcgacacactgggggccggctttaccttg
gcctcacaagaccttgatatcaggggggctggcaaccttctgggagaggaacaatccgga
cagatgcgcgatgttggctatgagttgtaccaatcgatgctgcaagaggcgattgccaag
atccaatccggtgaaatggaaggtctgtcagaggctgatgatcaatgggcaccgcaaatc
aatcttggcgtgcccgtgctgatccccgaggctttcgtgccggatcttgatgtgagattg
ggtctgtaccgccgcctgtcttcgttgaccagcaaagttgaattagagggttttgcggca
gaattgattgaccgctttggcaaacttccgaaagaggtcaatacgctgatgctggtggta
cggatcaaggcgatgtgcaaacgggctggcattgccaaactggatggaggacccaaaggt
gccacgatccagttccataacgacaaatttgcctcgccgactggattggttgagtttatt
caatctcaggatgggcttgccaaagtcaaagataacaagattgtcgtgcggcgtgactgg
cgtagcgacggggacaaaatcaaaggtgcttttgcaattgcccgagaactggctgaaaag
gtagttgcagccaaaaagaagacgaaaaaatccgcctaa
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