Parasedimentitalea marina: EBB79_17415
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Entry
EBB79_17415 CDS
T05780
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
sedi
Parasedimentitalea marina
Brite
KEGG Orthology (KO) [BR:
sedi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sedi03016
]
EBB79_17415 (thpR)
Enzymes [BR:
sedi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
EBB79_17415 (thpR)
Transfer RNA biogenesis [BR:
sedi03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
EBB79_17415 (thpR)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Acb1
T2SSM_b
Corona_NS2A
Motif
Other DBs
NCBI-ProteinID:
AZV79470
UniProt:
A0A3T0N611
LinkDB
All DBs
Position
complement(3570216..3570776)
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AA seq
186 aa
AA seq
DB search
MMRAFVAIELPDEVTTALSQLSLSLHVVRPNPQENLHLTLAFLGDQSDRLLEELHYELAG
IPVQGFELGFDGLGCFNAGAPKILYARIAASKALADLHQQVRRAAHRAGIVLDRQRYIPH
VTLARFGQGLPWRDAQRLEGFIADHATAPLPPFTVAGFSLFQSTLHRDGAIHRRLSGYGF
GQDLGL
NT seq
561 nt
NT seq
+upstream
nt +downstream
nt
atgatgcgcgcctttgtggccatagaactgccggatgaggtcaccacagccctgtctcag
ctcagcctctccctgcatgttgtcaggccaaaccctcaggaaaacctgcatcttacgctg
gcattcctgggggatcagtctgacagactgctggaagagctgcattatgagttggcgggc
atcccggtgcaggggtttgaactggggtttgacgggctgggctgctttaacgcaggtgcg
cccaagatcctgtatgcgcgcatcgctgccagcaaggcgctggcagatctgcatcagcag
gtgcgccgtgcggcacatcgcgcagggattgtgctggaccggcaacgctacataccgcat
gtcacgctggcccggttcgggcagggcttgccatggcgggatgctcagcgtctggaaggg
tttatcgccgaccatgccactgcccctttgccgccattcacggttgccgggttttccctg
tttcaatcaaccctgcaccgggacggcgccattcaccggcgcctgtctggttatgggttt
ggccaagacctcggattataa
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