Sedimentibacter sp. MB35-C1: RBQ61_05190
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Entry
RBQ61_05190 CDS
T10438
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03420
Nucleotide excision repair
sedm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RBQ61_05190
03430 Mismatch repair
RBQ61_05190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sedm03400
]
RBQ61_05190
Enzymes [BR:
sedm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RBQ61_05190
DNA repair and recombination proteins [BR:
sedm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RBQ61_05190
MMR (mismatch excision repair)
Other MMR factors
RBQ61_05190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
Viral_helicase1
AAA_30
AAA_11
ResIII
AAA_12
CarD_TRCF_RID
DUF3553
Motif
Other DBs
NCBI-ProteinID:
WMJ78330
UniProt:
A0AA51DCP3
LinkDB
All DBs
Position
1131596..1133845
Genome browser
AA seq
749 aa
AA seq
DB search
MELLNKLNEKQREAASHDKGPILVIAGAGTGKTRVLTHRIAYLIEEGKAMPWEILAITFT
NKAANEMKERIAQLIDYDIDRMWIGTFHSVCVRILRKNIERLGYDSNFVIYDTNDQKIII
KDCIKELDIDSKKYNVNSIKAVISAEKNNRRLPDKFIAENYTDFYKRNVGEVYSLYEKKL
KKANALDFDDLLIKTLKLIETEPDIKKFYQERFKYILVDEYQDTNLIQYSLVKILGQKPD
GESNVFVVGDEDQSIYGWRGADINNILNFEKDFAGAKVVKLEKNYRSTNIILNVANGVIK
NNCQRKGKNLFTDCDNGNLIRIMETDNEKDEAFTVAALMRKERRDNNISYADMAVLYRTN
AQSRALEEGLIREGIPYKIVGGLKFYERKEIKDIMAYLMLIYNQKDDISFDRIINVPRRK
IGAKTVELITRHSYDAGVSKFEACFDTDLLNLSASAEKSVEGFVSMIEMLMIKKDVISVS
EFIQEVYESTGYKSMLEEDDSVEGRSRIENIDEFMSAAKDFEERYEENSIEDFLAHVSLL
ADVDKTDETKVDTVTLMTVHAAKGLEFDTVFVTGLEEGTFPIIHQDELDDDLEEERRLFY
VAVTRAKRMLYITHADDRMRFGNHEMKMGSRFLKEIPEDCIEESDPRTFAARKVERLENE
DFPVNSSKQQSHFTKNKFFKGGFDIGKKEDKPKLKSDKIMPGDRVMHKAWGIGTVVQIKD
DGDSKVIVIAFENKGLKNLNLEYAPIEKI
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggaattattaaataaattgaatgaaaagcaaagagaagcggcttcgcatgacaaaggc
cccatacttgttatagcaggagctggtacgggtaagactcgtgtgcttacgcataggatc
gcgtatcttattgaagagggaaaagcaatgccatgggaaatacttgccattacgtttact
aataaggctgcaaatgaaatgaaggaaagaattgcccagcttattgattatgacattgac
agaatgtggatcggaacttttcactcagtgtgtgtgagaatattaagaaaaaatattgaa
agactaggatatgatagtaattttgtcatttatgatacaaacgatcagaaaattataata
aaagactgcataaaggaattagatattgactctaaaaagtataatgttaattctattaaa
gcggtaataagtgcggaaaagaataacaggagacttcctgataagtttatagcggaaaat
tatacggatttttataaaaggaatgtgggagaggtatattcgctttatgagaaaaagctg
aagaaagcaaatgctcttgattttgatgatcttcttataaaaactctaaaacttatagaa
acagagccggatataaaaaaattctatcaggagagatttaagtacattcttgtagacgag
tatcaagatactaatttaattcagtacagccttgttaaaattttagggcagaaacctgac
ggtgaaagcaatgtatttgttgtaggtgatgaggatcagtccatatacggatggagagga
gcggatatcaacaatattcttaattttgaaaaggactttgcaggtgcaaaggttgtaaag
ctcgaaaaaaattaccgctcaacaaatattatactgaatgttgccaatggagtcataaag
aataattgtcagaggaagggtaaaaatctgtttactgattgcgataacgggaatctcata
agaatcatggagactgacaatgaaaaggatgaggcatttacagttgctgcattaatgaga
aaagaaagaagagacaataatatcagctatgccgatatggctgttttgtacagaacaaat
gcacagtcgagggcgcttgaagagggattgattcgcgagggcataccatataaaattgtt
ggaggacttaagttctacgaaagaaaagaaattaaggatataatggcgtacttgatgctt
atttacaatcaaaaggatgatataagctttgacagaataattaatgtaccaagaagaaaa
atcggtgcgaaaactgtagaattgataacacggcattcatatgatgcaggtgtttcaaaa
tttgaagcctgttttgatacggatctgctaaatttatctgcatctgctgaaaaaagcgta
gaaggctttgtttccatgattgaaatgcttatgataaaaaaggatgtaatttctgtttcg
gaatttatacaagaagtatatgaatcaaccgggtataagtcgatgcttgaggaagatgac
agtgttgagggaagaagcagaatcgaaaatatagatgaatttatgtctgcagctaaggac
tttgaggaaaggtatgaggagaacagtattgaagatttcctggctcacgtttctttgctg
gctgacgtagataagacagatgaaacaaaagtcgacacggtaacactgatgactgtgcat
gcagcaaaggggctggaatttgataccgtatttgtaacaggacttgaggagggcactttc
cctattattcatcaggacgaattagacgatgatttggaagaggagagaaggttgttctac
gttgcggtcaccagagcaaaaagaatgctgtatataacccatgcagatgacagaatgcgt
tttggaaatcacgaaatgaaaatgggttcgagatttttaaaagaaatacctgaagattgc
atagaagaaagtgatccacggacttttgccgctaggaaggttgaaagattagaaaatgag
gattttccagttaattccagcaaacaacaatcccactttactaaaaataaattttttaaa
ggtggatttgatatagggaaaaaagaagataaaccgaaattaaaatcagataaaattatg
cctggagacagggttatgcataaggcatggggaatcggaactgttgttcagatcaaagat
gacggcgatagtaaagtgatagttatagcgtttgaaaacaagggattaaaaaatttgaat
ttggaatacgcaccgatagaaaaaatataa
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