Sedimentibacter sp. MB35-C1: RBQ61_08435
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Entry
RBQ61_08435 CDS
T10438
Name
(GenBank) HD domain-containing protein
KO
K03698
3'-5' exoribonuclease [EC:3.1.-.-]
Organism
sedm Sedimentibacter sp. MB35-C1
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedm03019
]
RBQ61_08435
Messenger RNA biogenesis [BR:
sedm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBQ61_08435
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Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_anti-codon
TraI_2
Motif
Other DBs
NCBI-ProteinID:
WMJ78945
UniProt:
A0AA51DDV0
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All DBs
Position
1775481..1776494
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AA seq
337 aa
AA seq
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MSSIEDLLNDKAKEQMKTMRNPNKNISELTAGEKADGFYLVKSSEVKKTTNGKQYIDIEL
VDKTGEINAKIWEYTEEKEAILKNNSIVKVRGEVLEWNGSKQLKVNKVRAKNSSDSIQVS
ELIPSAPISNDEMYTEVESYIDKINDKEIKLLVRNIISKYSNKLLYYPAAKKNHHSYMGG
LLYHTLRMLQSGEKLGQVYGFLRMDYVYSGVILHDICKILEMDSDEYGVVSDYTMEGKLL
GHIIQGIKEIEIEGDKIGIDREKSIILQHMVLSHHYEPEFGSPKKPMTPEAELLHFLDII
DARMFDFEHALEGIGDGQFTDKIWILDNRNLYKMSGE
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtatagaagacttgttaaatgataaagcaaaagagcagatgaaaactatgaga
aatcccaacaaaaatatttctgagctgacggcaggcgaaaaagcagatggattctatctc
gtaaaaagcagcgaggttaagaagactacaaacggaaagcagtacatagatattgaattg
gtggataaaacgggtgaaattaacgcgaaaatatgggagtataccgaagaaaaagaagct
atcctgaaaaataattctattgtcaaagtaagaggagaggttttagaatggaacgggtca
aagcagcttaaagtaaataaagtaagagctaagaactcttcggattccatacaagtatcg
gagcttataccttcggcacctattagtaatgatgaaatgtatacggaagttgaatcatat
atagataaaattaatgataaagaaattaaattgcttgtaagaaatataatttccaaatac
agtaataagctgctttactatcccgctgcaaaaaaaaatcaccactcatacatgggggga
ctgctgtaccatacgcttaggatgttgcagtcaggtgaaaagcttggtcaggtgtatggc
tttctaagaatggattacgtgtattcaggagttatactccatgacatatgtaaaatactg
gaaatggactctgatgaatacggtgttgtttctgactacacaatggaaggtaagctgttg
gggcatataatccaaggaataaaggaaatagaaattgaaggagataaaatcggtatagac
agggaaaagagcataattctacagcacatggttttatctcaccattatgaaccggaattc
ggcagccctaaaaagcccatgactcccgaagcagagcttttgcattttctggacataata
gatgcaagaatgtttgactttgaacatgcgcttgaaggtataggagatggccaatttacc
gataagatatggattttggataacagaaatttgtataaaatgtcaggtgagtaa
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