KEGG   Sedimentibacter sp. MB35-C1: RBQ61_10590
Entry
RBQ61_10590       CDS       T10438                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sedm  Sedimentibacter sp. MB35-C1
Pathway
sedm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sedm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RBQ61_10590 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sedm03400]
    RBQ61_10590 (ligD)
Enzymes [BR:sedm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RBQ61_10590 (ligD)
DNA repair and recombination proteins [BR:sedm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RBQ61_10590 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme RNA_ligase
Other DBs
NCBI-ProteinID: WMJ76072
UniProt: A0AA51H647
LinkDB
Position
2219507..2221951
AA seq 814 aa
MSEKLGNYNQKRNFERTIEPEGKTEDSGEGLRFVVQHHMARRDHYDLRLEWEGVLLSWAV
PKGPSYDTRDKRLAVHVEDHPLEYRNFEGNIPKGEYGGGVVMLWDEGFWEPYGDAAEGLL
KGDLKFILKGRRLKGRWALVRWKAKSGEDKDNWLLLKEKDPYANTGEGISKYITSVRTGR
TMEEIESGEDEKITKNPFDSVQVQLAKLVGNVPEGENWLYELKYDGFRIVAFVEGNGVRL
ITRNGNDYAKRFQNVAHSIINWSDGRSMVLDGEMTVTDESGRTDFNALQNYMKNPKFQNL
IYIVFDILALDGEDLRERHLIERKKILEDLMKDAPQNLYYSRYVTGSGVESFNVACETGM
EGVIGKKIDSVYSGTRNGDWIKLKCDKRQEFVIGGYSLSDKRISGVSSLLLGIYKGDKLL
YTGRAGSGISESDMIMLEEKFEGLKRSDSPFINAPKARANEKVTWLEPELAAEIKFAEWT
KDNILRQASFKGIRTDKEPKSIKMEKTDEEIQFNLLDEADTEKFMEVNSNSIVVEGIKIT
NLNKVIFEEPDITKEDVVRYYLNVSKYMLPYVSRRVLSVVRCPKGVSKSCFYKKHPEQNS
KGIITVPVSNDSGEEENYFCIENIQGLIYEAQMGTLEFHTWGSCVDELEKPDIMVFDLDP
DEGMELSKVRQGVRDVKSILAELSLNSYLKTSGGKGYHVVVPLKPSVTWEVFYDFSKKVA
EVMEQKWPDRYTSNVRKAKRKGKIFIDWIRNGRGATSVAPYSLRARSGAKVSMPISWDEL
DTVDPDGINMSDVLLRIQGNDPWKDFFQNNQRLK
NT seq 2445 nt   +upstreamnt  +downstreamnt
atgtctgaaaaattaggaaattacaatcaaaaaaggaattttgaaaggactattgagccg
gagggaaaaactgaagattcaggagaagggctgagatttgttgtccaacatcatatggcg
cgaagagatcactacgatttgcgccttgaatgggaaggggttctcctaagctgggcggtt
ccaaagggaccgtcctatgatactcgtgacaaaaggttagctgtacatgtagaggaccac
ccgcttgaatacagaaattttgagggaaacattccaaagggtgaatacggcggcggtgtg
gttatgctttgggatgaagggttttgggaaccttacggagatgcagctgaaggtttgctt
aaaggtgatttgaaatttattctgaaaggcaggagacttaaaggaaggtgggccttggtt
cgctggaaagctaaatccggcgaggataaagataattggcttttattgaaagaaaaggac
ccttatgctaatacaggtgaaggcatatcgaagtatataaccagcgtgagaacgggtcgc
acaatggaggagattgagagcggagaagatgaaaaaattacaaaaaatccatttgactct
gttcaggtccagcttgctaagctagttggtaatgtacctgaaggcgagaactggctatat
gaattgaaatatgacggttttaggatagttgcttttgtagaaggaaatggtgtgcgctta
ataaccagaaatggtaatgattatgcaaagagatttcaaaatgtggcacattctattatt
aattggtctgacggaagatccatggtgcttgacggcgaaatgactgttactgacgaatcg
ggcagaactgattttaatgctcttcaaaactatatgaaaaatccaaaatttcaaaatttg
atatatattgtatttgacattttggcattggatggggaagatcttcgagagcggcactta
atcgaaagaaaaaaaatacttgaagacttaatgaaggatgctccacaaaatctgtactat
agccgttatgtgacaggaagcggagttgaaagctttaatgttgcctgcgaaacaggtatg
gaaggggtaatcggaaagaaaatcgattcggtatacagcggcacaagaaatggtgactgg
attaaattaaaatgcgacaaaagacaggaatttgtgataggagggtactctctctctgat
aaaaggataagcggagtaagttcacttcttcttggcatttacaaaggagataaattacta
tacaccggtcgtgccggttcaggaataagtgaatctgatatgataatgctcgaggaaaaa
tttgaagggttgaaaaggagtgattcgccttttataaatgctcctaaagccagggcgaat
gaaaaggtaacatggcttgagcctgagcttgcagctgaaataaagtttgccgagtggaca
aaagacaatattttaaggcaggcaagctttaaaggtattaggactgacaaagaacctaag
agcataaaaatggagaaaacggatgaggaaatacagtttaatcttcttgatgaagcagat
acggagaaatttatggaagtaaattcaaacagcattgttgttgaagggataaaaattacc
aacctcaacaaggttatatttgaagaaccagatattacaaaggaggatgtagttagatac
tatttaaatgtatcaaagtacatgctgccgtatgtaagccgacgggtgctcagtgtagtg
cgctgtcctaaaggagtttcaaagtcctgcttttataaaaagcatccggagcagaacagc
aaaggaataattacagtgccggtttcaaacgacagcggagaagaggaaaattatttttgt
attgagaatatacaaggtcttatatacgaggcacagatgggcacattggaatttcataca
tggggaagctgtgttgacgagcttgaaaagccggatataatggtatttgacctggatccg
gatgagggaatggagttgagcaaagtgcgtcagggtgtgagagatgttaaaagcattctt
gccgaactgtctttgaattcatatctcaagaccagcggaggtaaggggtaccatgtggtt
gttcctctaaaaccatctgttacatgggaagttttttatgatttttcaaagaaggttgct
gaggtcatggagcaaaagtggccggaccgctacacaagcaatgtgagaaaagctaagcgc
aagggcaaaatatttattgattggattagaaacggaagaggcgcaacgagtgttgctccg
tattcactgagggccagaagtggagccaaggtatccatgccaatttcatgggatgaactt
gacacggtcgatcccgatggcataaatatgtctgacgtgcttttaagaattcaaggaaat
gatccgtggaaggatttttttcagaataaccagaggcttaaataa

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