Sedimentibacter sp. MB35-C1: RBQ61_10990
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Entry
RBQ61_10990 CDS
T10438
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBQ61_10990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedm03019
]
RBQ61_10990
03016 Transfer RNA biogenesis [BR:
sedm03016
]
RBQ61_10990
Enzymes [BR:
sedm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RBQ61_10990
Messenger RNA biogenesis [BR:
sedm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RBQ61_10990
Transfer RNA biogenesis [BR:
sedm03016
]
Prokaryotic type
tRNA degradation factors
RBQ61_10990
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
KH-I_KHDC4-BBP
OB_PDCD11
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
WMJ76150
LinkDB
All DBs
Position
2298489..2300582
Genome browser
AA seq
697 aa
AA seq
DB search
MEEKVFKYTLAGRELKVTTGKIAELTNGSCIVQYGDTVIMANVAASKEPRQGIDFFPLSV
DFEEKLYSVGKIPGGFIKREGKPGEKAILTSRLIDRPLRPLFPKGYRNDVSVTVTVLSVD
QDCSPEIAGMIGSSIALTISDIPFDGPTGSVNIGLINDEFIVNPSSKEREATALNLTVSG
TKEAIMMVEAGADEISEAKMLEAILFAHEEIKKICDFISEIKAEVGKEKSDYLKFVCDES
IEQEIREYAAPIINEAIIVKDKLERQDRIDSFKAQTKEVFLEKYPENEADIDDALYTIIK
EKVRENILVRGIRPDNRQIDEIRKISCEVGMLPRTHGSAIFTRGQTQVLTVTTLGVSSDE
QTLDGISEETSKRYMHHYNFPSYSVGETRPSRGPGRREIGHGALAERALEPVIPSVDVFP
YTIRLVSEVLSSNGSTSQASVCGSTLSLMDAGVPIKSPVAGVAMGLMKQDDNVVVLTDIQ
GMEDFLGDMDFKVAGTKDGITAIQMDIKVHGIDRNVLTNALEKARVGRLFILDKMLACID
KPRDEISKYAPKIISMTINPDKIRDVIGAGGKVINKIIEETGVKIDIEDDGSVLIAAENV
ESAYKAKEIIEGIIKEIEVGEIMLGKVVRIVTFGAFVELTNNKDGLLHISQISDKRVAKV
EDVLSVGDEILVKVIEIDNQGKIKLSRKEAIKETENK
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaaagtttttaaatatacgctcgcaggaagagaattaaaagttactaccggc
aaaatagcagagcttacaaacggctcttgcatcgtacaatacggagatacggtaataatg
gctaatgttgcggcatcaaaagagccaagacagggtatagacttttttccgttgagcgtt
gattttgaggagaagctttattctgtgggaaaaattcccggaggatttattaaaagagaa
ggcaaaccgggagaaaaggcaatactaacgtcaagactaatagacagaccgttgagaccg
ctgtttccgaaaggatacagaaatgatgtttcggtaactgttactgtattgtcagtggat
caggattgttcgcctgaaatagctgggatgataggttcttcaattgcattgaccatatca
gatattccctttgacgggccgacaggttctgtaaacataggtcttattaatgatgaattt
attgtaaacccaagcagcaaggaaagagaagctacggctttgaacttaactgtttctggt
acaaaagaagccataatgatggttgaagctggtgcagatgaaataagcgaagctaaaatg
cttgaagcaatattgtttgctcacgaagaaattaagaaaatatgtgactttattagtgag
ataaaagcagaagtaggaaaagaaaaatcagactatctaaaatttgtatgtgatgaatcg
attgaacaagaaatcagagaatatgccgcacctataataaatgaggctataatagttaaa
gataagcttgagagacaagacagaatcgatagtttcaaagcgcagacaaaggaagtattc
ttggaaaagtatcctgaaaatgaagctgatattgatgatgctctttatactataattaag
gaaaaggtaagggaaaatattcttgtaagaggtataagacctgacaacagacaaattgat
gaaataagaaaaatttcatgcgaagttggaatgcttcctagaactcatggatctgcaata
tttactagaggccagactcaggttcttacagtaacgactttgggcgtttcaagtgatgaa
cagacactggacggtatatctgaggaaacatctaaaagatatatgcatcattacaacttc
ccatcttattcagtaggagaaaccagaccttcaagaggacctggcagaagagaaatcgga
cacggagcattagcagaacgtgcattggagcctgttattccatcggtggatgtattccct
tacacaataagacttgtttctgaagttcttagttcaaacggttcaacttcacaggcttct
gtatgcggcagtacattgtctttaatggatgccggagttcctattaaatcacctgtagca
ggagtggcaatgggattaatgaaacaagatgacaatgttgtagtgcttactgacatacag
ggaatggaagactttttgggagatatggacttcaaggtagccggaacaaaagacggtata
actgcaatccagatggatataaaagttcatggaatcgacagaaatgttttaacaaatgca
ttagaaaaggctcgcgttggaagactgtttatattggataaaatgcttgcatgcattgat
aaaccaagagatgaaataagtaagtacgcacctaagataataagcatgacaattaatcct
gataagataagagatgttataggagcaggcggtaaggttatcaataagataatcgaagaa
acaggagtaaaaattgacattgaagatgacggttcagtactcatagctgccgaaaatgtt
gagagtgcttataaagctaaagaaataattgaaggcattattaaggaaatagaagtagga
gaaataatgctcggcaaggttgtaagaattgttacatttggagcgtttgttgaacttaca
aataacaaagacggacttttgcatatatctcagatatccgacaaaagagttgcaaaagta
gaggacgttttaagcgtaggcgatgaaatacttgttaaagtaatagaaatcgacaatcaa
ggaaaaataaaactttcaagaaaagaagctataaaagaaaccgaaaataaataa
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