Sedimentibacter sp. MB35-C1: RBQ61_12090
Help
Entry
RBQ61_12090 CDS
T10438
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sedm Sedimentibacter sp. MB35-C1
Pathway
sedm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sedm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RBQ61_12090 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sedm03019
]
RBQ61_12090 (rnr)
03016 Transfer RNA biogenesis [BR:
sedm03016
]
RBQ61_12090 (rnr)
Enzymes [BR:
sedm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RBQ61_12090 (rnr)
Messenger RNA biogenesis [BR:
sedm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RBQ61_12090 (rnr)
Transfer RNA biogenesis [BR:
sedm03016
]
Prokaryotic type
tRNA degradation factors
RBQ61_12090 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
WHD_TBPIP
S1CSD-TOTE-2
TFA2_Winged_2
PF0610-like_N
S1_RRP5
QcrA_N
Motif
Other DBs
NCBI-ProteinID:
WMJ76362
LinkDB
All DBs
Position
complement(2523799..2525976)
Genome browser
AA seq
725 aa
AA seq
DB search
MNFKEKILEFMREEAYKPLTLSELMRVFKIESSMKKEVLKTLNELESEGRVIFTRSNRYG
LPEKMNLIIGTLDGNQKGFAFLRPDDDKINDIFISPADMNGAMHGDRVIVRPMKTTEEVK
SPEGKVIRIIQRANSYVIGTFQKSRHFGFVVADDKRIAYDIFIPREEFNGANTNDKVNVI
ITEWPHERKNPEGKIVDIIGNIGDTDTHIEAVLLNKKVRQTFPEDVIKEAVRVSAEGIHQ
QEYKRRADLRTLNIITIDGEDAKDLDDGVYAVKISDDEYKLGVHIADVTHYVKEDRKMDK
EALKRGTSIYLVNRVIPMLPKELSNGVCSLNPNEDKLALSVDMTINGKGNVVDYKIYESI
IKNHYRMTYTDVSEILENNDEKLSLKYKEIVPMLKTMEELSLILRKKRETRGAIDFEFPE
TKIVTDEKGKAVDVTKYERRVSNKVIEEFMLVCNETVAEHYYWMNMPFVYRIHEEPDEVK
MFEFNTLIHNLGYTLKGVNNEIHPKELQQLLAKIKGKKEENLINNMMLRSLKKAIYSSKS
SQHFGLAAQYYCHFTSPIRRYPDLQIHRIIKGQLNGKFTEQDYQRLTDRTAAVAEQSSTM
ERIADEVERDVDKIKIAEYMSDKIGNEYEGTVSGVTSFGLFVELENSVEGLVHISNMTDD
FYIFNDERRELFGQASRKTYKIGDDVKIRVENVSIPRAEIDFAFIDEFSEDDFEYDENEL
TGIGN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaactttaaagaaaaaattttggaatttatgagagaggaagcttacaagcctttaaca
ttaagcgagctcatgcgtgtgtttaaaattgagagcagcatgaaaaaagaagtgttaaag
acacttaacgaattagaaagtgaaggcagagtaatttttaccagatctaacagatatggt
ttgccggaaaaaatgaacttgattataggaacgttggatggaaatcaaaaaggatttgca
ttcctaagacctgatgacgacaaaataaacgacatatttatttcccctgctgacatgaac
ggtgccatgcacggggacagagtcatagtaaggcctatgaaaacaactgaagaggtaaaa
agtccagaaggaaaagttatacgaatcatacaaagggctaacagctatgttataggaacg
tttcaaaaaagcagacactttggttttgtggttgcagatgataagcgaattgcatatgat
attttcatacctagagaagagtttaacggagcaaataccaacgacaaggtaaatgtaata
ataactgaatggcctcacgaaagaaaaaatcctgaaggtaaaattgttgatataattgga
aatataggggatacggatacacatatagaagctgtacttttaaacaaaaaagtaagacag
acatttccagaagatgttataaaggaagctgtaagagtatccgcagaaggaattcaccag
caggaatacaaaagaagagccgatttaagaacgcttaacattattacaattgacggtgaa
gatgcaaaagacttggatgatggtgtttacgcagttaaaattagcgatgatgaatacaaa
cttggggtacacatagcggatgtaactcactacgttaaggaagaccgaaagatggataaa
gaagccttaaaaagaggaacgagcatttatcttgtaaatagagttattccaatgcttcca
aaagaattatcaaatggagtgtgcagccttaatcccaatgaagataagcttgctctttct
gtagatatgactattaacggcaagggcaacgtagttgattataaaatatatgaaagcata
ataaaaaatcattatcgcatgacgtatactgacgtatcggaaattctggaaaacaatgat
gaaaaacttagccttaagtataaggaaatagtacctatgctgaaaacaatggaagaatta
agccttatactgagaaagaaaagagaaacaagaggagcaatagactttgaatttccggaa
acaaaaattgttacagatgaaaaaggaaaggctgttgatgtaacgaagtatgaaaggcgt
gtatctaataaagtaatcgaagaatttatgctggtatgcaatgaaactgttgcagagcat
tattactggatgaatatgccgtttgtgtataggatacatgaggaaccggatgaggtcaaa
atgtttgaattcaacacacttattcataatcttggctatactctgaagggagtgaacaac
gaaattcatccgaaagagttgcagcagcttctcgcaaaaattaaaggaaaaaaagaagaa
aatctaataaataatatgatgcttaggtcattaaagaaggctatatattcatcgaaaagc
tcacagcactttgggttggcagcacaatactactgccattttacttctcctatcagaaga
taccctgatttacagatacaccgtattataaaagggcaactaaatggcaaatttacagaa
caggattatcagagacttactgatagaacagcagctgttgcagagcagtcatctaccatg
gaaagaattgctgatgaagtagaaagagatgtagataaaattaaaatagcggagtatatg
tctgacaaaataggaaatgagtatgaaggaactgtatccggagtaacaagctttggatta
tttgtagaacttgaaaattcagttgaaggtcttgtacatatatcaaatatgacagatgac
ttctatatttttaatgacgaaagaagagaattattcggtcaagcaagcagaaaaacatat
aaaattggcgacgatgtaaaaataagagttgaaaatgtaagcattccgagagcagaaatt
gactttgcgtttattgatgaatttagcgaagatgattttgaatatgatgaaaatgagctt
acgggaataggaaactga
DBGET
integrated database retrieval system
